Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10930

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10920 and ECOLIN_RS10925 overlap by 4 nucleotidesECOLIN_RS10925 and ECOLIN_RS10930 are separated by 14 nucleotidesECOLIN_RS10930 and ECOLIN_RS10935 are separated by 112 nucleotides ECOLIN_RS10920: ECOLIN_RS10920 - L-cystine ABC transporter ATP-binding protein TcyN, at 2,121,901 to 2,122,653 _RS10920 ECOLIN_RS10925: ECOLIN_RS10925 - cystine ABC transporter permease, at 2,122,650 to 2,123,318 _RS10925 ECOLIN_RS10930: ECOLIN_RS10930 - D-cysteine desulfhydrase, at 2,123,333 to 2,124,319 _RS10930 ECOLIN_RS10935: ECOLIN_RS10935 - cystine ABC transporter substrate-binding protein, at 2,124,432 to 2,125,232 _RS10935 Position (kb) 2123 2124 2125Strain fitness (log2 ratio) -1 0 1at 2122.555 kb on - strand, within ECOLIN_RS10920at 2123.554 kb on - strand, within ECOLIN_RS10930at 2123.859 kb on + strand, within ECOLIN_RS10930

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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2,122,555 - ECOLIN_RS10920 0.87 -0.5
2,123,554 - ECOLIN_RS10930 0.22 +0.5
2,123,859 + ECOLIN_RS10930 0.53 -0.6

Or see this region's nucleotide sequence