Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS04500

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS04490 and ECOLIN_RS04495 are separated by 83 nucleotidesECOLIN_RS04495 and ECOLIN_RS04500 are separated by 204 nucleotidesECOLIN_RS04500 and ECOLIN_RS04505 are separated by 169 nucleotidesECOLIN_RS04505 and ECOLIN_RS04510 are separated by 171 nucleotides ECOLIN_RS04490: ECOLIN_RS04490 - MFS transporter, at 912,134 to 913,342 _RS04490 ECOLIN_RS04495: ECOLIN_RS04495 - DNA-binding transcriptional regulator RcdA, at 913,426 to 913,962 _RS04495 ECOLIN_RS04500: ECOLIN_RS04500 - transporter, at 914,167 to 914,505 _RS04500 ECOLIN_RS04505: ECOLIN_RS04505 - transporter, at 914,675 to 915,013 _RS04505 ECOLIN_RS04510: ECOLIN_RS04510 - aspartate:alanine antiporter, at 915,185 to 916,870 _RS04510 Position (kb) 914 915Strain fitness (log2 ratio) -1 0 1at 913.321 kb on + strandat 913.567 kb on + strand, within ECOLIN_RS04495

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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913,321 + -0.3
913,567 + ECOLIN_RS04495 0.26 +1.1

Or see this region's nucleotide sequence