Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS01720 and ECOLIN_RS01730 are separated by 389 nucleotides ECOLIN_RS01730 and ECOLIN_RS27675 are separated by 25 nucleotides ECOLIN_RS27675 and ECOLIN_RS01735 are separated by 51 nucleotides ECOLIN_RS01735 and ECOLIN_RS01740 are separated by 180 nucleotides ECOLIN_RS01740 and ECOLIN_RS01745 are separated by 42 nucleotides
ECOLIN_RS01720: ECOLIN_RS01720 - IS630 family transposase, at 345,428 to 346,236
_RS01720
ECOLIN_RS01730: ECOLIN_RS01730 - PFL_4695 family integrating conjugative element protein, at 346,626 to 346,826
_RS01730
ECOLIN_RS27675: ECOLIN_RS27675 - ISAs1 family transposase, at 346,852 to 347,046
_RS27675
ECOLIN_RS01735: ECOLIN_RS01735 - 2-oxoglutaramate amidase, at 347,098 to 347,868
_RS01735
ECOLIN_RS01740: ECOLIN_RS01740 - Ivy family C-type lysozyme inhibitor, at 348,049 to 348,495
_RS01740
ECOLIN_RS01745: ECOLIN_RS01745 - acyl-CoA dehydrogenase FadE, at 348,538 to 350,982
_RS01745
Position (kb) 347
348 Strain fitness (log2 ratio) -1
0
1
2 at 347.149 kb on - strand at 347.310 kb on - strand, within ECOLIN_RS01735 at 347.388 kb on - strand, within ECOLIN_RS01735 at 347.388 kb on - strand, within ECOLIN_RS01735 at 347.438 kb on - strand, within ECOLIN_RS01735 at 347.516 kb on - strand, within ECOLIN_RS01735 at 347.516 kb on - strand, within ECOLIN_RS01735 at 347.516 kb on - strand, within ECOLIN_RS01735 at 347.684 kb on - strand, within ECOLIN_RS01735 at 347.873 kb on + strand at 347.873 kb on + strand at 347.874 kb on - strand at 347.874 kb on - strand at 347.907 kb on - strand at 348.217 kb on + strand, within ECOLIN_RS01740 at 348.218 kb on - strand, within ECOLIN_RS01740 at 348.256 kb on + strand, within ECOLIN_RS01740 at 348.493 kb on + strand at 348.846 kb on - strand, within ECOLIN_RS01745 at 348.862 kb on - strand, within ECOLIN_RS01745 at 348.862 kb on - strand, within ECOLIN_RS01745
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 347,149 - +0.4 347,310 - ECOLIN_RS01735 0.27 -0.7 347,388 - ECOLIN_RS01735 0.38 -1.1 347,388 - ECOLIN_RS01735 0.38 +0.4 347,438 - ECOLIN_RS01735 0.44 +0.8 347,516 - ECOLIN_RS01735 0.54 +1.8 347,516 - ECOLIN_RS01735 0.54 -0.2 347,516 - ECOLIN_RS01735 0.54 +0.5 347,684 - ECOLIN_RS01735 0.76 +1.6 347,873 + +1.3 347,873 + -1.1 347,874 - -0.6 347,874 - +0.2 347,907 - +0.1 348,217 + ECOLIN_RS01740 0.38 -0.1 348,218 - ECOLIN_RS01740 0.38 +1.0 348,256 + ECOLIN_RS01740 0.46 -1.7 348,493 + -0.1 348,846 - ECOLIN_RS01745 0.13 +0.6 348,862 - ECOLIN_RS01745 0.13 +0.1 348,862 - ECOLIN_RS01745 0.13 +0.0
Or see this region's nucleotide sequence