Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS31280

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS04285 and ECOLIN_RS31280 are separated by 264 nucleotidesECOLIN_RS31280 and ECOLIN_RS04295 are separated by 275 nucleotides ECOLIN_RS04285: ECOLIN_RS04285 - catecholate siderophore receptor Fiu, at 866,853 to 869,135 _RS04285 ECOLIN_RS31280: ECOLIN_RS31280 - DUF1471 family periplasmic protein McbA, at 869,400 to 869,660 _RS31280 ECOLIN_RS04295: ECOLIN_RS04295 - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 869,936 to 870,862 _RS04295 Position (kb) 869 870Strain fitness (log2 ratio) -1 0 1at 868.681 kb on - strand, within ECOLIN_RS04285at 869.388 kb on - strandat 869.462 kb on - strand, within ECOLIN_RS31280at 869.678 kb on + strandat 869.678 kb on + strandat 869.881 kb on - strandat 870.193 kb on + strand, within ECOLIN_RS04295at 870.538 kb on + strand, within ECOLIN_RS04295

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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868,681 - ECOLIN_RS04285 0.80 -0.4
869,388 - -1.1
869,462 - ECOLIN_RS31280 0.24 +0.2
869,678 + +0.6
869,678 + +0.1
869,881 - -0.1
870,193 + ECOLIN_RS04295 0.28 +0.8
870,538 + ECOLIN_RS04295 0.65 +0.3

Or see this region's nucleotide sequence