Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS16280 and ECOLIN_RS16285 overlap by 13 nucleotides ECOLIN_RS16285 and ECOLIN_RS16290 overlap by 7 nucleotides ECOLIN_RS16290 and ECOLIN_RS16295 overlap by 29 nucleotides ECOLIN_RS16295 and ECOLIN_RS16300 overlap by 4 nucleotides
ECOLIN_RS16280: ECOLIN_RS16280 - energy-coupling factor transporter transmembrane component T, at 3,302,127 to 3,302,834
_RS16280
ECOLIN_RS16285: ECOLIN_RS16285 - energy-coupling factor ABC transporter ATP-binding protein, at 3,302,822 to 3,303,499
_RS16285
ECOLIN_RS16290: ECOLIN_RS16290 - sulfate/molybdate ABC transporter ATP-binding protein, at 3,303,493 to 3,304,170
_RS16290
ECOLIN_RS16295: ECOLIN_RS16295 - nucleoside/nucleotide kinase family protein, at 3,304,142 to 3,304,855
_RS16295
ECOLIN_RS16300: ECOLIN_RS16300 - fumarase E, at 3,304,852 to 3,305,361
_RS16300
Position (kb) 3303
3304
3305 Strain fitness (log2 ratio) -1
0
1
2 at 3302.620 kb on + strand, within ECOLIN_RS16280 at 3302.732 kb on + strand, within ECOLIN_RS16280 at 3302.761 kb on + strand, within ECOLIN_RS16280 at 3302.789 kb on - strand at 3302.827 kb on + strand at 3303.332 kb on - strand, within ECOLIN_RS16285 at 3303.332 kb on - strand, within ECOLIN_RS16285 at 3303.512 kb on + strand at 3303.840 kb on + strand, within ECOLIN_RS16290 at 3304.130 kb on + strand at 3304.131 kb on - strand at 3304.181 kb on + strand at 3304.182 kb on - strand at 3304.249 kb on - strand, within ECOLIN_RS16295 at 3304.592 kb on - strand, within ECOLIN_RS16295 at 3304.596 kb on + strand, within ECOLIN_RS16295 at 3304.596 kb on + strand, within ECOLIN_RS16295 at 3304.597 kb on - strand, within ECOLIN_RS16295 at 3304.597 kb on - strand, within ECOLIN_RS16295 at 3304.742 kb on + strand, within ECOLIN_RS16295 at 3304.871 kb on - strand at 3304.977 kb on - strand, within ECOLIN_RS16300 at 3305.030 kb on - strand, within ECOLIN_RS16300 at 3305.109 kb on - strand, within ECOLIN_RS16300 at 3305.119 kb on - strand, within ECOLIN_RS16300
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 3,302,620 + ECOLIN_RS16280 0.70 -0.1 3,302,732 + ECOLIN_RS16280 0.85 +0.4 3,302,761 + ECOLIN_RS16280 0.90 -0.0 3,302,789 - +0.5 3,302,827 + +0.5 3,303,332 - ECOLIN_RS16285 0.75 +1.6 3,303,332 - ECOLIN_RS16285 0.75 +0.1 3,303,512 + +1.8 3,303,840 + ECOLIN_RS16290 0.51 +0.2 3,304,130 + -0.4 3,304,131 - -0.9 3,304,181 + -0.4 3,304,182 - +0.5 3,304,249 - ECOLIN_RS16295 0.15 +0.4 3,304,592 - ECOLIN_RS16295 0.63 -0.7 3,304,596 + ECOLIN_RS16295 0.64 -1.3 3,304,596 + ECOLIN_RS16295 0.64 +0.3 3,304,597 - ECOLIN_RS16295 0.64 +1.7 3,304,597 - ECOLIN_RS16295 0.64 -0.2 3,304,742 + ECOLIN_RS16295 0.84 -0.2 3,304,871 - +0.3 3,304,977 - ECOLIN_RS16300 0.25 -0.4 3,305,030 - ECOLIN_RS16300 0.35 +0.6 3,305,109 - ECOLIN_RS16300 0.50 +0.1 3,305,119 - ECOLIN_RS16300 0.52 -0.0
Or see this region's nucleotide sequence