Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS11100

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS11095 and ECOLIN_RS11100 overlap by 4 nucleotidesECOLIN_RS11100 and ECOLIN_RS11105 are separated by 2 nucleotidesECOLIN_RS11105 and ECOLIN_RS11110 overlap by 1 nucleotides ECOLIN_RS11095: ECOLIN_RS11095 - flagellar motor switch protein FliM, at 2,150,696 to 2,151,700 _RS11095 ECOLIN_RS11100: ECOLIN_RS11100 - flagellar motor switch protein FliN, at 2,151,697 to 2,152,110 _RS11100 ECOLIN_RS11105: ECOLIN_RS11105 - flagellar biosynthetic protein FliO, at 2,152,113 to 2,152,478 _RS11105 ECOLIN_RS11110: ECOLIN_RS11110 - flagellar type III secretion system pore protein FliP, at 2,152,478 to 2,153,215 _RS11110 Position (kb) 2151 2152 2153Strain fitness (log2 ratio) -1 0 1at 2150.704 kb on + strandat 2151.340 kb on + strand, within ECOLIN_RS11095at 2151.343 kb on + strand, within ECOLIN_RS11095at 2152.048 kb on + strand, within ECOLIN_RS11100at 2152.127 kb on + strandat 2152.127 kb on + strandat 2152.774 kb on + strand, within ECOLIN_RS11110

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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2,150,704 + -0.3
2,151,340 + ECOLIN_RS11095 0.64 -0.0
2,151,343 + ECOLIN_RS11095 0.64 -0.2
2,152,048 + ECOLIN_RS11100 0.85 -1.6
2,152,127 + -0.1
2,152,127 + -0.3
2,152,774 + ECOLIN_RS11110 0.40 +0.2

Or see this region's nucleotide sequence