Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS09630

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS09620 and ECOLIN_RS09625 are separated by 100 nucleotidesECOLIN_RS09625 and ECOLIN_RS09630 are separated by 105 nucleotidesECOLIN_RS09630 and ECOLIN_RS09635 are separated by 40 nucleotidesECOLIN_RS09635 and ECOLIN_RS09640 are separated by 146 nucleotides ECOLIN_RS09620: ECOLIN_RS09620 - 6-phosphofructokinase II, at 1,893,778 to 1,894,707 _RS09620 ECOLIN_RS09625: ECOLIN_RS09625 - type V toxin-antitoxin system endoribonuclease antitoxin GhoS, at 1,894,808 to 1,895,098 _RS09625 ECOLIN_RS09630: ECOLIN_RS09630 - fructosamine kinase family protein, at 1,895,204 to 1,896,064 _RS09630 ECOLIN_RS09635: ECOLIN_RS09635 - YniB family protein, at 1,896,105 to 1,896,641 _RS09635 ECOLIN_RS09640: ECOLIN_RS09640 - hexitol phosphatase HxpB, at 1,896,788 to 1,897,456 _RS09640 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -1 0 1at 1895.173 kb on - strandat 1896.216 kb on - strand, within ECOLIN_RS09635

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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1,895,173 - -0.2
1,896,216 - ECOLIN_RS09635 0.21 -0.5

Or see this region's nucleotide sequence