Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02405 and ECOLIN_RS02410 are separated by 189 nucleotides ECOLIN_RS02410 and ECOLIN_RS02415 are separated by 57 nucleotides
ECOLIN_RS02405: ECOLIN_RS02405 - exonuclease subunit SbcD, at 490,564 to 491,766
_RS02405
ECOLIN_RS02410: ECOLIN_RS02410 - phosphate response regulator transcription factor PhoB, at 491,956 to 492,645
_RS02410
ECOLIN_RS02415: ECOLIN_RS02415 - phosphate regulon sensor histidine kinase PhoR, at 492,703 to 493,998
_RS02415
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.006 kb on + strand, within ECOLIN_RS02405 at 491.007 kb on - strand, within ECOLIN_RS02405 at 491.117 kb on + strand, within ECOLIN_RS02405 at 491.117 kb on + strand, within ECOLIN_RS02405 at 491.168 kb on + strand, within ECOLIN_RS02405 at 491.169 kb on - strand, within ECOLIN_RS02405 at 491.169 kb on - strand, within ECOLIN_RS02405 at 491.169 kb on - strand, within ECOLIN_RS02405 at 491.212 kb on + strand, within ECOLIN_RS02405 at 491.273 kb on + strand, within ECOLIN_RS02405 at 491.273 kb on + strand, within ECOLIN_RS02405 at 491.274 kb on - strand, within ECOLIN_RS02405 at 491.356 kb on - strand, within ECOLIN_RS02405 at 491.437 kb on - strand, within ECOLIN_RS02405 at 491.579 kb on + strand, within ECOLIN_RS02405 at 491.580 kb on - strand, within ECOLIN_RS02405 at 491.581 kb on + strand, within ECOLIN_RS02405 at 491.582 kb on - strand, within ECOLIN_RS02405 at 491.582 kb on - strand, within ECOLIN_RS02405 at 491.637 kb on + strand, within ECOLIN_RS02405 at 491.720 kb on + strand at 491.861 kb on + strand at 491.933 kb on + strand at 491.933 kb on + strand at 491.940 kb on + strand at 491.941 kb on - strand at 492.194 kb on + strand, within ECOLIN_RS02410 at 492.259 kb on + strand, within ECOLIN_RS02410 at 492.260 kb on - strand, within ECOLIN_RS02410 at 492.520 kb on + strand, within ECOLIN_RS02410 at 492.520 kb on + strand, within ECOLIN_RS02410 at 492.520 kb on + strand, within ECOLIN_RS02410 at 492.521 kb on - strand, within ECOLIN_RS02410 at 492.521 kb on - strand, within ECOLIN_RS02410 at 492.535 kb on - strand, within ECOLIN_RS02410 at 492.664 kb on + strand at 492.677 kb on - strand at 492.700 kb on + strand at 492.700 kb on + strand at 492.700 kb on + strand at 492.701 kb on - strand at 492.746 kb on + strand at 492.885 kb on + strand, within ECOLIN_RS02415 at 492.886 kb on - strand, within ECOLIN_RS02415 at 492.888 kb on + strand, within ECOLIN_RS02415 at 492.913 kb on - strand, within ECOLIN_RS02415 at 492.929 kb on + strand, within ECOLIN_RS02415 at 492.938 kb on + strand, within ECOLIN_RS02415 at 493.247 kb on - strand, within ECOLIN_RS02415 at 493.346 kb on + strand, within ECOLIN_RS02415 at 493.346 kb on + strand, within ECOLIN_RS02415 at 493.346 kb on + strand, within ECOLIN_RS02415 at 493.346 kb on + strand, within ECOLIN_RS02415 at 493.346 kb on + strand, within ECOLIN_RS02415 at 493.499 kb on + strand, within ECOLIN_RS02415 at 493.499 kb on + strand, within ECOLIN_RS02415
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 491,006 + ECOLIN_RS02405 0.37 +1.0 491,007 - ECOLIN_RS02405 0.37 +0.9 491,117 + ECOLIN_RS02405 0.46 -0.2 491,117 + ECOLIN_RS02405 0.46 +0.5 491,168 + ECOLIN_RS02405 0.50 -0.5 491,169 - ECOLIN_RS02405 0.50 +0.2 491,169 - ECOLIN_RS02405 0.50 -0.2 491,169 - ECOLIN_RS02405 0.50 +0.0 491,212 + ECOLIN_RS02405 0.54 -0.5 491,273 + ECOLIN_RS02405 0.59 +0.9 491,273 + ECOLIN_RS02405 0.59 +0.7 491,274 - ECOLIN_RS02405 0.59 +0.2 491,356 - ECOLIN_RS02405 0.66 -0.0 491,437 - ECOLIN_RS02405 0.73 +0.0 491,579 + ECOLIN_RS02405 0.84 +0.2 491,580 - ECOLIN_RS02405 0.84 -0.1 491,581 + ECOLIN_RS02405 0.85 +0.8 491,582 - ECOLIN_RS02405 0.85 +0.6 491,582 - ECOLIN_RS02405 0.85 +0.1 491,637 + ECOLIN_RS02405 0.89 +0.1 491,720 + -1.2 491,861 + +1.2 491,933 + -2.2 491,933 + -0.3 491,940 + +0.3 491,941 - -1.5 492,194 + ECOLIN_RS02410 0.34 -0.2 492,259 + ECOLIN_RS02410 0.44 -0.4 492,260 - ECOLIN_RS02410 0.44 +0.1 492,520 + ECOLIN_RS02410 0.82 +0.4 492,520 + ECOLIN_RS02410 0.82 +0.2 492,520 + ECOLIN_RS02410 0.82 +0.2 492,521 - ECOLIN_RS02410 0.82 +0.8 492,521 - ECOLIN_RS02410 0.82 +0.8 492,535 - ECOLIN_RS02410 0.84 +0.4 492,664 + -0.1 492,677 - +0.3 492,700 + +2.4 492,700 + -0.1 492,700 + +0.1 492,701 - -1.0 492,746 + -0.0 492,885 + ECOLIN_RS02415 0.14 +0.4 492,886 - ECOLIN_RS02415 0.14 +1.1 492,888 + ECOLIN_RS02415 0.14 -0.2 492,913 - ECOLIN_RS02415 0.16 -0.8 492,929 + ECOLIN_RS02415 0.17 -0.4 492,938 + ECOLIN_RS02415 0.18 +0.1 493,247 - ECOLIN_RS02415 0.42 +1.2 493,346 + ECOLIN_RS02415 0.50 -0.4 493,346 + ECOLIN_RS02415 0.50 -0.6 493,346 + ECOLIN_RS02415 0.50 +0.1 493,346 + ECOLIN_RS02415 0.50 -1.0 493,346 + ECOLIN_RS02415 0.50 -0.3 493,499 + ECOLIN_RS02415 0.61 -1.7 493,499 + ECOLIN_RS02415 0.61 +0.5
Or see this region's nucleotide sequence