Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20440 and ECOLIN_RS20445 are separated by 200 nucleotides ECOLIN_RS20445 and ECOLIN_RS20450 are separated by 11 nucleotides ECOLIN_RS20450 and ECOLIN_RS20455 are separated by 22 nucleotides
ECOLIN_RS20440: ECOLIN_RS20440 - IclR family transcriptional regulator YiaJ, at 4,112,563 to 4,113,411
_RS20440
ECOLIN_RS20445: ECOLIN_RS20445 - 3-dehydro-L-gulonate 2-dehydrogenase, at 4,113,612 to 4,114,610
_RS20445
ECOLIN_RS20450: ECOLIN_RS20450 - YhcH/YjgK/YiaL family protein, at 4,114,622 to 4,115,086
_RS20450
ECOLIN_RS20455: ECOLIN_RS20455 - DUF4862 family protein, at 4,115,109 to 4,116,029
_RS20455
Position (kb) 4113
4114
4115 Strain fitness (log2 ratio) -1
0
1
2 at 4112.616 kb on + strand at 4112.616 kb on + strand at 4112.616 kb on + strand at 4112.949 kb on - strand, within ECOLIN_RS20440 at 4112.968 kb on + strand, within ECOLIN_RS20440 at 4112.970 kb on + strand, within ECOLIN_RS20440 at 4112.973 kb on - strand, within ECOLIN_RS20440 at 4112.973 kb on - strand, within ECOLIN_RS20440 at 4112.973 kb on - strand, within ECOLIN_RS20440 at 4113.012 kb on + strand, within ECOLIN_RS20440 at 4113.013 kb on - strand, within ECOLIN_RS20440 at 4113.013 kb on - strand, within ECOLIN_RS20440 at 4113.055 kb on - strand, within ECOLIN_RS20440 at 4113.058 kb on - strand, within ECOLIN_RS20440 at 4113.150 kb on + strand, within ECOLIN_RS20440 at 4113.151 kb on - strand, within ECOLIN_RS20440 at 4113.635 kb on - strand at 4113.635 kb on - strand at 4113.978 kb on + strand, within ECOLIN_RS20445 at 4114.005 kb on + strand, within ECOLIN_RS20445 at 4114.006 kb on - strand, within ECOLIN_RS20445 at 4114.159 kb on + strand, within ECOLIN_RS20445 at 4114.160 kb on - strand, within ECOLIN_RS20445 at 4114.195 kb on + strand, within ECOLIN_RS20445 at 4114.314 kb on - strand, within ECOLIN_RS20445 at 4114.470 kb on + strand, within ECOLIN_RS20445 at 4114.470 kb on + strand, within ECOLIN_RS20445 at 4114.471 kb on - strand, within ECOLIN_RS20445 at 4114.471 kb on - strand, within ECOLIN_RS20445 at 4114.532 kb on + strand at 4114.533 kb on - strand at 4114.565 kb on + strand at 4114.616 kb on + strand at 4114.823 kb on + strand, within ECOLIN_RS20450 at 4114.912 kb on - strand, within ECOLIN_RS20450 at 4114.978 kb on + strand, within ECOLIN_RS20450 at 4114.978 kb on + strand, within ECOLIN_RS20450 at 4115.008 kb on - strand, within ECOLIN_RS20450 at 4115.024 kb on - strand, within ECOLIN_RS20450 at 4115.132 kb on + strand at 4115.133 kb on - strand at 4115.133 kb on - strand at 4115.210 kb on - strand, within ECOLIN_RS20455 at 4115.294 kb on + strand, within ECOLIN_RS20455 at 4115.416 kb on - strand, within ECOLIN_RS20455 at 4115.436 kb on - strand, within ECOLIN_RS20455
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 4,112,616 + +0.9 4,112,616 + -0.5 4,112,616 + -0.1 4,112,949 - ECOLIN_RS20440 0.45 +0.1 4,112,968 + ECOLIN_RS20440 0.48 -0.5 4,112,970 + ECOLIN_RS20440 0.48 -0.6 4,112,973 - ECOLIN_RS20440 0.48 +0.3 4,112,973 - ECOLIN_RS20440 0.48 +2.5 4,112,973 - ECOLIN_RS20440 0.48 +0.2 4,113,012 + ECOLIN_RS20440 0.53 -0.3 4,113,013 - ECOLIN_RS20440 0.53 +0.2 4,113,013 - ECOLIN_RS20440 0.53 +0.1 4,113,055 - ECOLIN_RS20440 0.58 +0.4 4,113,058 - ECOLIN_RS20440 0.58 +0.3 4,113,150 + ECOLIN_RS20440 0.69 +0.4 4,113,151 - ECOLIN_RS20440 0.69 +0.2 4,113,635 - +0.0 4,113,635 - -0.4 4,113,978 + ECOLIN_RS20445 0.37 +0.4 4,114,005 + ECOLIN_RS20445 0.39 +0.1 4,114,006 - ECOLIN_RS20445 0.39 +0.2 4,114,159 + ECOLIN_RS20445 0.55 +0.8 4,114,160 - ECOLIN_RS20445 0.55 -0.0 4,114,195 + ECOLIN_RS20445 0.58 +0.4 4,114,314 - ECOLIN_RS20445 0.70 -0.5 4,114,470 + ECOLIN_RS20445 0.86 +0.5 4,114,470 + ECOLIN_RS20445 0.86 +0.2 4,114,471 - ECOLIN_RS20445 0.86 +0.1 4,114,471 - ECOLIN_RS20445 0.86 +0.9 4,114,532 + -0.6 4,114,533 - -0.3 4,114,565 + +0.1 4,114,616 + +0.4 4,114,823 + ECOLIN_RS20450 0.43 -0.0 4,114,912 - ECOLIN_RS20450 0.62 -0.0 4,114,978 + ECOLIN_RS20450 0.77 +0.2 4,114,978 + ECOLIN_RS20450 0.77 -0.3 4,115,008 - ECOLIN_RS20450 0.83 -0.1 4,115,024 - ECOLIN_RS20450 0.86 -0.6 4,115,132 + -0.1 4,115,133 - -0.7 4,115,133 - +0.4 4,115,210 - ECOLIN_RS20455 0.11 +0.4 4,115,294 + ECOLIN_RS20455 0.20 +0.2 4,115,416 - ECOLIN_RS20455 0.33 +0.2 4,115,436 - ECOLIN_RS20455 0.36 +0.3
Or see this region's nucleotide sequence