Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20120 and ECOLIN_RS20125 are separated by 210 nucleotides ECOLIN_RS20125 and ECOLIN_RS20130 are separated by 404 nucleotides
ECOLIN_RS20120: ECOLIN_RS20120 - glutamate decarboxylase, at 4,038,257 to 4,039,657
_RS20120
ECOLIN_RS20125: ECOLIN_RS20125 - cytochrome c peroxidase, at 4,039,868 to 4,041,265
_RS20125
ECOLIN_RS20130: ECOLIN_RS20130 - alpha,alpha-trehalase, at 4,041,670 to 4,043,319
_RS20130
Position (kb) 4039
4040
4041
4042 Strain fitness (log2 ratio) -1
0
1
2
3 at 4039.739 kb on + strand at 4039.865 kb on + strand at 4039.885 kb on + strand at 4039.886 kb on - strand at 4039.964 kb on + strand at 4040.029 kb on - strand, within ECOLIN_RS20125 at 4040.029 kb on - strand, within ECOLIN_RS20125 at 4040.029 kb on - strand, within ECOLIN_RS20125 at 4040.219 kb on - strand, within ECOLIN_RS20125 at 4040.219 kb on - strand, within ECOLIN_RS20125 at 4040.291 kb on - strand, within ECOLIN_RS20125 at 4040.399 kb on - strand, within ECOLIN_RS20125 at 4040.546 kb on - strand, within ECOLIN_RS20125 at 4040.777 kb on - strand, within ECOLIN_RS20125 at 4040.790 kb on + strand, within ECOLIN_RS20125 at 4040.902 kb on - strand, within ECOLIN_RS20125 at 4040.997 kb on + strand, within ECOLIN_RS20125 at 4041.009 kb on - strand, within ECOLIN_RS20125 at 4041.043 kb on + strand, within ECOLIN_RS20125 at 4041.045 kb on + strand, within ECOLIN_RS20125 at 4041.048 kb on + strand, within ECOLIN_RS20125 at 4041.051 kb on + strand, within ECOLIN_RS20125 at 4041.052 kb on - strand, within ECOLIN_RS20125 at 4041.059 kb on + strand, within ECOLIN_RS20125 at 4041.124 kb on + strand, within ECOLIN_RS20125 at 4041.172 kb on + strand at 4041.192 kb on + strand at 4041.192 kb on + strand at 4041.247 kb on + strand at 4041.247 kb on + strand at 4041.248 kb on - strand at 4041.539 kb on - strand at 4041.670 kb on - strand at 4041.936 kb on + strand, within ECOLIN_RS20130 at 4042.036 kb on + strand, within ECOLIN_RS20130 at 4042.040 kb on + strand, within ECOLIN_RS20130 at 4042.040 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.153 kb on + strand, within ECOLIN_RS20130 at 4042.154 kb on - strand, within ECOLIN_RS20130 at 4042.154 kb on - strand, within ECOLIN_RS20130 at 4042.154 kb on - strand, within ECOLIN_RS20130 at 4042.155 kb on + strand, within ECOLIN_RS20130 at 4042.156 kb on - strand, within ECOLIN_RS20130 at 4042.156 kb on - strand, within ECOLIN_RS20130 at 4042.201 kb on + strand, within ECOLIN_RS20130
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 4,039,739 + -0.6 4,039,865 + +0.4 4,039,885 + +0.1 4,039,886 - +0.1 4,039,964 + +0.6 4,040,029 - ECOLIN_RS20125 0.12 -0.2 4,040,029 - ECOLIN_RS20125 0.12 +0.1 4,040,029 - ECOLIN_RS20125 0.12 +0.3 4,040,219 - ECOLIN_RS20125 0.25 +0.3 4,040,219 - ECOLIN_RS20125 0.25 +0.2 4,040,291 - ECOLIN_RS20125 0.30 +0.2 4,040,399 - ECOLIN_RS20125 0.38 -0.2 4,040,546 - ECOLIN_RS20125 0.48 +0.2 4,040,777 - ECOLIN_RS20125 0.65 -0.6 4,040,790 + ECOLIN_RS20125 0.66 -0.1 4,040,902 - ECOLIN_RS20125 0.74 +0.1 4,040,997 + ECOLIN_RS20125 0.81 +0.4 4,041,009 - ECOLIN_RS20125 0.82 +0.6 4,041,043 + ECOLIN_RS20125 0.84 -0.0 4,041,045 + ECOLIN_RS20125 0.84 +1.6 4,041,048 + ECOLIN_RS20125 0.84 -0.0 4,041,051 + ECOLIN_RS20125 0.85 +0.1 4,041,052 - ECOLIN_RS20125 0.85 +0.7 4,041,059 + ECOLIN_RS20125 0.85 +0.7 4,041,124 + ECOLIN_RS20125 0.90 +0.2 4,041,172 + +0.2 4,041,192 + -0.2 4,041,192 + +0.4 4,041,247 + +0.2 4,041,247 + -0.4 4,041,248 - -0.1 4,041,539 - +3.0 4,041,670 - +0.3 4,041,936 + ECOLIN_RS20130 0.16 +0.0 4,042,036 + ECOLIN_RS20130 0.22 -0.4 4,042,040 + ECOLIN_RS20130 0.22 +0.3 4,042,040 + ECOLIN_RS20130 0.22 -0.3 4,042,153 + ECOLIN_RS20130 0.29 +0.1 4,042,153 + ECOLIN_RS20130 0.29 +0.5 4,042,153 + ECOLIN_RS20130 0.29 +0.2 4,042,153 + ECOLIN_RS20130 0.29 -0.1 4,042,153 + ECOLIN_RS20130 0.29 -0.4 4,042,153 + ECOLIN_RS20130 0.29 -0.2 4,042,153 + ECOLIN_RS20130 0.29 -0.1 4,042,153 + ECOLIN_RS20130 0.29 -0.3 4,042,154 - ECOLIN_RS20130 0.29 +0.3 4,042,154 - ECOLIN_RS20130 0.29 -0.1 4,042,154 - ECOLIN_RS20130 0.29 +0.8 4,042,155 + ECOLIN_RS20130 0.29 +2.1 4,042,156 - ECOLIN_RS20130 0.29 -0.6 4,042,156 - ECOLIN_RS20130 0.29 -0.0 4,042,201 + ECOLIN_RS20130 0.32 +0.3
Or see this region's nucleotide sequence