Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS17525

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS17515 and ECOLIN_RS17525 are separated by 147 nucleotidesECOLIN_RS17525 and ECOLIN_RS17530 are separated by 5 nucleotides ECOLIN_RS17515: ECOLIN_RS17515 - outer membrane channel protein TolC, at 3,528,652 to 3,530,133 _RS17515 ECOLIN_RS17525: ECOLIN_RS17525 - DUF1190 family protein, at 3,530,281 to 3,530,952 _RS17525 ECOLIN_RS17530: ECOLIN_RS17530 - glutathionylspermidine synthase family protein, at 3,530,958 to 3,532,118 _RS17530 Position (kb) 3530 3531Strain fitness (log2 ratio) -1 0 1at 3531.671 kb on + strand, within ECOLIN_RS17530

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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3,531,671 + ECOLIN_RS17530 0.61 -0.1

Or see this region's nucleotide sequence