Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17410 and ECOLIN_RS17415 are separated by 108 nucleotides ECOLIN_RS17415 and ECOLIN_RS17420 are separated by 52 nucleotides ECOLIN_RS17420 and ECOLIN_RS17425 are separated by 151 nucleotides ECOLIN_RS17425 and ECOLIN_RS17430 overlap by 4 nucleotides
ECOLIN_RS17410: ECOLIN_RS17410 - ABC transporter substrate-binding protein, at 3,509,187 to 3,510,794
_RS17410
ECOLIN_RS17415: ECOLIN_RS17415 - GyrI-like domain-containing protein, at 3,510,903 to 3,511,385
_RS17415
ECOLIN_RS17420: ECOLIN_RS17420 - OB fold stress tolerance protein YgiW, at 3,511,438 to 3,511,830
_RS17420
ECOLIN_RS17425: ECOLIN_RS17425 - quorum sensing response regulator transcription factor QseB, at 3,511,982 to 3,512,641
_RS17425
ECOLIN_RS17430: ECOLIN_RS17430 - quorum sensing histidine kinase QseC, at 3,512,638 to 3,513,987
_RS17430
Position (kb) 3511
3512 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3510.516 kb on - strand, within ECOLIN_RS17410 at 3510.538 kb on - strand, within ECOLIN_RS17410 at 3510.592 kb on - strand, within ECOLIN_RS17410 at 3510.790 kb on + strand at 3510.790 kb on + strand at 3510.790 kb on + strand at 3510.790 kb on + strand at 3510.919 kb on + strand at 3510.919 kb on + strand at 3510.919 kb on + strand at 3510.919 kb on + strand at 3510.920 kb on - strand at 3510.920 kb on - strand at 3510.920 kb on - strand at 3510.920 kb on - strand at 3511.166 kb on + strand, within ECOLIN_RS17415 at 3511.291 kb on + strand, within ECOLIN_RS17415 at 3511.358 kb on + strand at 3511.358 kb on + strand at 3511.358 kb on + strand at 3511.440 kb on - strand at 3511.447 kb on + strand at 3511.448 kb on - strand at 3511.522 kb on - strand, within ECOLIN_RS17420 at 3511.578 kb on + strand, within ECOLIN_RS17420 at 3511.604 kb on + strand, within ECOLIN_RS17420 at 3511.604 kb on + strand, within ECOLIN_RS17420 at 3511.605 kb on - strand, within ECOLIN_RS17420 at 3511.605 kb on - strand, within ECOLIN_RS17420 at 3511.605 kb on - strand, within ECOLIN_RS17420 at 3511.684 kb on + strand, within ECOLIN_RS17420 at 3511.684 kb on + strand, within ECOLIN_RS17420 at 3511.684 kb on + strand, within ECOLIN_RS17420 at 3511.685 kb on - strand, within ECOLIN_RS17420 at 3511.785 kb on + strand, within ECOLIN_RS17420 at 3511.834 kb on + strand at 3511.922 kb on - strand at 3511.959 kb on - strand at 3511.998 kb on + strand at 3512.102 kb on + strand, within ECOLIN_RS17425 at 3512.102 kb on + strand, within ECOLIN_RS17425 at 3512.102 kb on + strand, within ECOLIN_RS17425 at 3512.115 kb on - strand, within ECOLIN_RS17425 at 3512.298 kb on + strand, within ECOLIN_RS17425 at 3512.460 kb on + strand, within ECOLIN_RS17425 at 3512.516 kb on + strand, within ECOLIN_RS17425 at 3512.516 kb on + strand, within ECOLIN_RS17425 at 3512.517 kb on - strand, within ECOLIN_RS17425 at 3512.517 kb on - strand, within ECOLIN_RS17425 at 3512.518 kb on + strand, within ECOLIN_RS17425 at 3512.519 kb on - strand, within ECOLIN_RS17425 at 3512.629 kb on - strand at 3512.658 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 3,510,516 - ECOLIN_RS17410 0.83 +0.5 3,510,538 - ECOLIN_RS17410 0.84 -0.2 3,510,592 - ECOLIN_RS17410 0.87 +0.2 3,510,790 + +0.4 3,510,790 + +3.3 3,510,790 + +1.1 3,510,790 + +0.4 3,510,919 + +0.1 3,510,919 + -0.1 3,510,919 + +0.3 3,510,919 + -0.1 3,510,920 - +0.3 3,510,920 - +0.5 3,510,920 - +0.0 3,510,920 - +0.5 3,511,166 + ECOLIN_RS17415 0.54 -4.3 3,511,291 + ECOLIN_RS17415 0.80 +0.6 3,511,358 + +0.7 3,511,358 + +0.4 3,511,358 + +0.3 3,511,440 - -0.0 3,511,447 + -0.2 3,511,448 - +0.1 3,511,522 - ECOLIN_RS17420 0.21 +0.2 3,511,578 + ECOLIN_RS17420 0.36 +0.4 3,511,604 + ECOLIN_RS17420 0.42 +0.5 3,511,604 + ECOLIN_RS17420 0.42 +0.1 3,511,605 - ECOLIN_RS17420 0.42 +1.0 3,511,605 - ECOLIN_RS17420 0.42 +0.6 3,511,605 - ECOLIN_RS17420 0.42 +0.8 3,511,684 + ECOLIN_RS17420 0.63 -0.3 3,511,684 + ECOLIN_RS17420 0.63 -0.7 3,511,684 + ECOLIN_RS17420 0.63 -1.1 3,511,685 - ECOLIN_RS17420 0.63 -0.1 3,511,785 + ECOLIN_RS17420 0.88 -0.7 3,511,834 + -0.4 3,511,922 - +0.3 3,511,959 - -0.3 3,511,998 + +0.5 3,512,102 + ECOLIN_RS17425 0.18 +0.9 3,512,102 + ECOLIN_RS17425 0.18 -0.0 3,512,102 + ECOLIN_RS17425 0.18 +0.2 3,512,115 - ECOLIN_RS17425 0.20 -0.3 3,512,298 + ECOLIN_RS17425 0.48 +0.4 3,512,460 + ECOLIN_RS17425 0.72 -0.1 3,512,516 + ECOLIN_RS17425 0.81 +0.2 3,512,516 + ECOLIN_RS17425 0.81 -0.3 3,512,517 - ECOLIN_RS17425 0.81 +0.5 3,512,517 - ECOLIN_RS17425 0.81 -0.2 3,512,518 + ECOLIN_RS17425 0.81 +0.1 3,512,519 - ECOLIN_RS17425 0.81 +1.4 3,512,629 - +0.3 3,512,658 + -2.6
Or see this region's nucleotide sequence