Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07575

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07565 and ECOLIN_RS07570 are separated by 104 nucleotidesECOLIN_RS07570 and ECOLIN_RS07575 are separated by 29 nucleotidesECOLIN_RS07575 and ECOLIN_RS28330 are separated by 27 nucleotidesECOLIN_RS28330 and ECOLIN_RS07580 are separated by 239 nucleotides ECOLIN_RS07565: ECOLIN_RS07565 - acyl-CoA thioester hydrolase YciA, at 1,481,705 to 1,482,103 _RS07565 ECOLIN_RS07570: ECOLIN_RS07570 - septation protein A, at 1,482,208 to 1,482,747 _RS07570 ECOLIN_RS07575: ECOLIN_RS07575 - YciC family protein, at 1,482,777 to 1,483,520 _RS07575 ECOLIN_RS28330: ECOLIN_RS28330 - YkgJ family cysteine cluster protein, at 1,483,548 to 1,483,637 _RS28330 ECOLIN_RS07580: ECOLIN_RS07580 - outer membrane protein OmpW, at 1,483,877 to 1,484,515 _RS07580 Position (kb) 1482 1483 1484Strain fitness (log2 ratio) -1 0 1at 1482.059 kb on - strand, within ECOLIN_RS07565at 1483.617 kb on - strand, within ECOLIN_RS28330at 1483.787 kb on - strandat 1484.073 kb on - strand, within ECOLIN_RS07580

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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1,482,059 - ECOLIN_RS07565 0.89 -0.3
1,483,617 - ECOLIN_RS28330 0.77 -0.5
1,483,787 - +0.2
1,484,073 - ECOLIN_RS07580 0.31 -1.0

Or see this region's nucleotide sequence