Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02980

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02975 and ECOLIN_RS02980 are separated by 55 nucleotidesECOLIN_RS02980 and ECOLIN_RS02985 are separated by 21 nucleotides ECOLIN_RS02975: ECOLIN_RS02975 - allantoinase AllB, at 613,164 to 614,525 _RS02975 ECOLIN_RS02980: ECOLIN_RS02980 - uracil/xanthine transporter, at 614,581 to 615,882 _RS02980 ECOLIN_RS02985: ECOLIN_RS02985 - glycerate 3-kinase, at 615,904 to 617,049 _RS02985 Position (kb) 614 615 616Strain fitness (log2 ratio) -1 0 1at 613.794 kb on + strand, within ECOLIN_RS02975at 613.794 kb on + strand, within ECOLIN_RS02975at 613.794 kb on + strand, within ECOLIN_RS02975at 613.794 kb on + strand, within ECOLIN_RS02975at 613.950 kb on - strand, within ECOLIN_RS02975at 613.971 kb on + strand, within ECOLIN_RS02975at 614.966 kb on + strand, within ECOLIN_RS02980at 616.009 kb on + strandat 616.009 kb on + strandat 616.472 kb on + strand, within ECOLIN_RS02985

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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613,794 + ECOLIN_RS02975 0.46 +0.1
613,794 + ECOLIN_RS02975 0.46 -0.3
613,794 + ECOLIN_RS02975 0.46 +0.4
613,794 + ECOLIN_RS02975 0.46 -0.2
613,950 - ECOLIN_RS02975 0.58 -0.2
613,971 + ECOLIN_RS02975 0.59 +0.3
614,966 + ECOLIN_RS02980 0.30 -0.5
616,009 + -0.1
616,009 + -0.3
616,472 + ECOLIN_RS02985 0.50 +0.8

Or see this region's nucleotide sequence