Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22510 and ECOLIN_RS22515 are separated by 285 nucleotides ECOLIN_RS22515 and ECOLIN_RS22525 are separated by 259 nucleotides
ECOLIN_RS22510: ECOLIN_RS22510 - L-rhamnose/proton symporter RhaT, at 4,522,287 to 4,523,321
_RS22510
ECOLIN_RS22515: ECOLIN_RS22515 - superoxide dismutase [Mn], at 4,523,607 to 4,524,227
_RS22515
ECOLIN_RS22525: ECOLIN_RS22525 - 2-keto-3-deoxygluconate transporter, at 4,524,487 to 4,525,470
_RS22525
Position (kb) 4523
4524
4525 Strain fitness (log2 ratio) -2
-1
0
1 at 4522.672 kb on + strand, within ECOLIN_RS22510 at 4522.673 kb on - strand, within ECOLIN_RS22510 at 4522.673 kb on - strand, within ECOLIN_RS22510 at 4522.869 kb on + strand, within ECOLIN_RS22510 at 4522.934 kb on + strand, within ECOLIN_RS22510 at 4522.994 kb on + strand, within ECOLIN_RS22510 at 4522.995 kb on - strand, within ECOLIN_RS22510 at 4523.108 kb on + strand, within ECOLIN_RS22510 at 4523.128 kb on + strand, within ECOLIN_RS22510 at 4523.131 kb on + strand, within ECOLIN_RS22510 at 4523.152 kb on - strand, within ECOLIN_RS22510 at 4523.255 kb on - strand at 4523.545 kb on - strand at 4523.546 kb on + strand at 4523.606 kb on + strand at 4523.613 kb on + strand at 4523.614 kb on - strand at 4523.709 kb on + strand, within ECOLIN_RS22515 at 4523.710 kb on - strand, within ECOLIN_RS22515 at 4523.939 kb on + strand, within ECOLIN_RS22515 at 4523.940 kb on - strand, within ECOLIN_RS22515 at 4524.126 kb on + strand, within ECOLIN_RS22515 at 4524.129 kb on + strand, within ECOLIN_RS22515 at 4524.130 kb on - strand, within ECOLIN_RS22515 at 4524.130 kb on - strand, within ECOLIN_RS22515 at 4524.164 kb on + strand, within ECOLIN_RS22515 at 4524.495 kb on - strand at 4524.696 kb on - strand, within ECOLIN_RS22525 at 4524.703 kb on - strand, within ECOLIN_RS22525 at 4524.771 kb on + strand, within ECOLIN_RS22525 at 4524.883 kb on + strand, within ECOLIN_RS22525 at 4524.954 kb on + strand, within ECOLIN_RS22525 at 4525.010 kb on + strand, within ECOLIN_RS22525 at 4525.122 kb on + strand, within ECOLIN_RS22525
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 4,522,672 + ECOLIN_RS22510 0.37 +0.1 4,522,673 - ECOLIN_RS22510 0.37 +0.3 4,522,673 - ECOLIN_RS22510 0.37 -0.3 4,522,869 + ECOLIN_RS22510 0.56 +0.8 4,522,934 + ECOLIN_RS22510 0.63 +0.2 4,522,994 + ECOLIN_RS22510 0.68 +0.2 4,522,995 - ECOLIN_RS22510 0.68 +1.0 4,523,108 + ECOLIN_RS22510 0.79 -0.3 4,523,128 + ECOLIN_RS22510 0.81 -0.2 4,523,131 + ECOLIN_RS22510 0.82 -0.3 4,523,152 - ECOLIN_RS22510 0.84 +0.1 4,523,255 - +0.4 4,523,545 - +0.2 4,523,546 + +0.2 4,523,606 + +0.2 4,523,613 + -0.1 4,523,614 - +0.1 4,523,709 + ECOLIN_RS22515 0.16 -0.2 4,523,710 - ECOLIN_RS22515 0.17 -0.3 4,523,939 + ECOLIN_RS22515 0.53 +0.1 4,523,940 - ECOLIN_RS22515 0.54 -0.0 4,524,126 + ECOLIN_RS22515 0.84 -0.0 4,524,129 + ECOLIN_RS22515 0.84 +0.0 4,524,130 - ECOLIN_RS22515 0.84 -1.2 4,524,130 - ECOLIN_RS22515 0.84 -1.9 4,524,164 + ECOLIN_RS22515 0.90 -0.1 4,524,495 - +0.3 4,524,696 - ECOLIN_RS22525 0.21 +0.3 4,524,703 - ECOLIN_RS22525 0.22 +0.5 4,524,771 + ECOLIN_RS22525 0.29 +0.3 4,524,883 + ECOLIN_RS22525 0.40 +0.0 4,524,954 + ECOLIN_RS22525 0.47 -0.0 4,525,010 + ECOLIN_RS22525 0.53 -0.2 4,525,122 + ECOLIN_RS22525 0.65 -0.4
Or see this region's nucleotide sequence