Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02355 and ECOLIN_RS02360 are separated by 49 nucleotides ECOLIN_RS02360 and ECOLIN_RS02370 are separated by 257 nucleotides ECOLIN_RS02370 and ECOLIN_RS02375 are separated by 71 nucleotides ECOLIN_RS02375 and ECOLIN_RS02380 are separated by 147 nucleotides ECOLIN_RS02380 and ECOLIN_RS31260 overlap by 4 nucleotides
ECOLIN_RS02355: ECOLIN_RS02355 - shikimate kinase AroL, at 481,198 to 481,722
_RS02355
ECOLIN_RS02360: ECOLIN_RS02360 - protein YaiA, at 481,772 to 481,963
_RS02360
ECOLIN_RS02370: ECOLIN_RS02370 - AroM family protein, at 482,221 to 482,898
_RS02370
ECOLIN_RS02375: ECOLIN_RS02375 - pyrimidine/purine nucleoside phosphorylase, at 482,970 to 483,254
_RS02375
ECOLIN_RS02380: ECOLIN_RS02380 - DUF2773 domain-containing protein, at 483,402 to 483,743
_RS02380
ECOLIN_RS31260: ECOLIN_RS31260 - hypothetical protein, at 483,740 to 483,820
_RS31260
Position (kb) 482
483 Strain fitness (log2 ratio) -1
0
1
2 at 481.323 kb on + strand, within ECOLIN_RS02355 at 481.553 kb on + strand, within ECOLIN_RS02355 at 481.805 kb on + strand, within ECOLIN_RS02360 at 482.151 kb on + strand at 482.151 kb on + strand at 482.405 kb on + strand, within ECOLIN_RS02370 at 482.529 kb on + strand, within ECOLIN_RS02370 at 482.753 kb on + strand, within ECOLIN_RS02370 at 483.072 kb on + strand, within ECOLIN_RS02375 at 483.133 kb on + strand, within ECOLIN_RS02375 at 483.576 kb on - strand, within ECOLIN_RS02380
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 481,323 + ECOLIN_RS02355 0.24 +0.3 481,553 + ECOLIN_RS02355 0.68 -1.2 481,805 + ECOLIN_RS02360 0.17 +2.3 482,151 + +0.6 482,151 + +1.0 482,405 + ECOLIN_RS02370 0.27 -0.6 482,529 + ECOLIN_RS02370 0.45 -0.1 482,753 + ECOLIN_RS02370 0.78 +0.6 483,072 + ECOLIN_RS02375 0.36 +0.3 483,133 + ECOLIN_RS02375 0.57 -1.3 483,576 - ECOLIN_RS02380 0.51 +0.3
Or see this region's nucleotide sequence