Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22565 and ECOLIN_RS22570 are separated by 106 nucleotides ECOLIN_RS22570 and ECOLIN_RS22575 are separated by 54 nucleotides ECOLIN_RS22575 and ECOLIN_RS22580 are separated by 107 nucleotides ECOLIN_RS22580 and ECOLIN_RS22585 are separated by 100 nucleotides
ECOLIN_RS22565: ECOLIN_RS22565 - sulfate/thiosulfate ABC transporter substrate-binding protein Sbp, at 4,531,631 to 4,532,620
_RS22565
ECOLIN_RS22570: ECOLIN_RS22570 - CDP-diacylglycerol diphosphatase, at 4,532,727 to 4,533,482
_RS22570
ECOLIN_RS22575: ECOLIN_RS22575 - triose-phosphate isomerase, at 4,533,537 to 4,534,304
_RS22575
ECOLIN_RS22580: ECOLIN_RS22580 - DUF1454 family protein, at 4,534,412 to 4,535,011
_RS22580
ECOLIN_RS22585: ECOLIN_RS22585 - DUF805 domain-containing protein, at 4,535,112 to 4,535,552
_RS22585
Position (kb) 4533
4534
4535 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4532.632 kb on + strand at 4532.637 kb on - strand at 4532.828 kb on - strand, within ECOLIN_RS22570 at 4532.831 kb on + strand, within ECOLIN_RS22570 at 4532.832 kb on - strand, within ECOLIN_RS22570 at 4532.832 kb on - strand, within ECOLIN_RS22570 at 4533.152 kb on + strand, within ECOLIN_RS22570 at 4533.153 kb on - strand, within ECOLIN_RS22570 at 4533.162 kb on - strand, within ECOLIN_RS22570 at 4533.162 kb on - strand, within ECOLIN_RS22570 at 4533.256 kb on - strand, within ECOLIN_RS22570 at 4533.290 kb on - strand, within ECOLIN_RS22570 at 4533.290 kb on - strand, within ECOLIN_RS22570 at 4533.306 kb on - strand, within ECOLIN_RS22570 at 4533.355 kb on - strand, within ECOLIN_RS22570 at 4533.503 kb on - strand at 4533.503 kb on - strand at 4533.539 kb on - strand at 4533.719 kb on + strand, within ECOLIN_RS22575 at 4534.007 kb on + strand, within ECOLIN_RS22575 at 4534.007 kb on + strand, within ECOLIN_RS22575 at 4534.037 kb on - strand, within ECOLIN_RS22575 at 4534.037 kb on - strand, within ECOLIN_RS22575 at 4534.037 kb on - strand, within ECOLIN_RS22575 at 4534.061 kb on + strand, within ECOLIN_RS22575 at 4534.233 kb on - strand at 4534.322 kb on - strand at 4534.322 kb on - strand at 4534.533 kb on + strand, within ECOLIN_RS22580 at 4534.534 kb on - strand, within ECOLIN_RS22580 at 4534.536 kb on + strand, within ECOLIN_RS22580 at 4534.559 kb on + strand, within ECOLIN_RS22580 at 4534.560 kb on - strand, within ECOLIN_RS22580 at 4534.635 kb on + strand, within ECOLIN_RS22580 at 4534.635 kb on + strand, within ECOLIN_RS22580 at 4534.636 kb on - strand, within ECOLIN_RS22580 at 4534.636 kb on - strand, within ECOLIN_RS22580 at 4534.636 kb on - strand, within ECOLIN_RS22580 at 4534.636 kb on - strand, within ECOLIN_RS22580 at 4534.738 kb on + strand, within ECOLIN_RS22580 at 4534.746 kb on + strand, within ECOLIN_RS22580 at 4534.746 kb on + strand, within ECOLIN_RS22580 at 4534.979 kb on + strand at 4534.980 kb on - strand at 4534.980 kb on - strand at 4534.980 kb on - strand at 4535.044 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.110 kb on - strand at 4535.110 kb on - strand at 4535.110 kb on - strand at 4535.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 4,532,632 + -0.0 4,532,637 - +0.2 4,532,828 - ECOLIN_RS22570 0.13 -2.1 4,532,831 + ECOLIN_RS22570 0.14 +0.0 4,532,832 - ECOLIN_RS22570 0.14 -1.7 4,532,832 - ECOLIN_RS22570 0.14 -0.3 4,533,152 + ECOLIN_RS22570 0.56 +0.6 4,533,153 - ECOLIN_RS22570 0.56 +0.1 4,533,162 - ECOLIN_RS22570 0.58 +0.1 4,533,162 - ECOLIN_RS22570 0.58 +0.7 4,533,256 - ECOLIN_RS22570 0.70 +0.2 4,533,290 - ECOLIN_RS22570 0.74 -0.3 4,533,290 - ECOLIN_RS22570 0.74 +0.0 4,533,306 - ECOLIN_RS22570 0.77 +0.1 4,533,355 - ECOLIN_RS22570 0.83 -1.1 4,533,503 - +0.2 4,533,503 - -0.3 4,533,539 - -0.1 4,533,719 + ECOLIN_RS22575 0.24 -1.4 4,534,007 + ECOLIN_RS22575 0.61 +0.2 4,534,007 + ECOLIN_RS22575 0.61 -1.4 4,534,037 - ECOLIN_RS22575 0.65 -1.1 4,534,037 - ECOLIN_RS22575 0.65 +0.1 4,534,037 - ECOLIN_RS22575 0.65 -1.9 4,534,061 + ECOLIN_RS22575 0.68 -3.0 4,534,233 - -2.6 4,534,322 - -0.0 4,534,322 - -0.1 4,534,533 + ECOLIN_RS22580 0.20 -0.2 4,534,534 - ECOLIN_RS22580 0.20 -1.0 4,534,536 + ECOLIN_RS22580 0.21 -0.8 4,534,559 + ECOLIN_RS22580 0.24 -0.7 4,534,560 - ECOLIN_RS22580 0.25 -1.2 4,534,635 + ECOLIN_RS22580 0.37 -0.0 4,534,635 + ECOLIN_RS22580 0.37 -0.2 4,534,636 - ECOLIN_RS22580 0.37 -1.2 4,534,636 - ECOLIN_RS22580 0.37 -4.4 4,534,636 - ECOLIN_RS22580 0.37 -1.3 4,534,636 - ECOLIN_RS22580 0.37 -0.9 4,534,738 + ECOLIN_RS22580 0.54 -1.1 4,534,746 + ECOLIN_RS22580 0.56 -1.0 4,534,746 + ECOLIN_RS22580 0.56 -0.6 4,534,979 + -1.1 4,534,980 - -0.8 4,534,980 - -0.8 4,534,980 - -1.9 4,535,044 + -1.0 4,535,109 + +1.6 4,535,109 + -0.3 4,535,109 + -0.0 4,535,109 + +0.6 4,535,109 + -0.5 4,535,110 - -1.6 4,535,110 - -0.3 4,535,110 - -0.3 4,535,142 - -0.7
Or see this region's nucleotide sequence