Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS17500

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS17490 and ECOLIN_RS17495 are separated by 28 nucleotidesECOLIN_RS17495 and ECOLIN_RS17500 overlap by 1 nucleotidesECOLIN_RS17500 and ECOLIN_RS17505 are separated by 24 nucleotidesECOLIN_RS17505 and ECOLIN_RS17510 are separated by 0 nucleotides ECOLIN_RS17490: ECOLIN_RS17490 - DNA topoisomerase IV subunit B, at 3,524,041 to 3,525,933 _RS17490 ECOLIN_RS17495: ECOLIN_RS17495 - esterase YqiA, at 3,525,962 to 3,526,543 _RS17495 ECOLIN_RS17500: ECOLIN_RS17500 - 3',5'-cyclic-AMP phosphodiesterase, at 3,526,543 to 3,527,370 _RS17500 ECOLIN_RS17505: ECOLIN_RS17505 - DUF1249 family protein, at 3,527,395 to 3,527,817 _RS17505 ECOLIN_RS17510: ECOLIN_RS17510 - ADP-ribose diphosphatase, at 3,527,818 to 3,528,447 _RS17510 Position (kb) 3526 3527 3528Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3526.072 kb on - strand, within ECOLIN_RS17495at 3526.181 kb on - strand, within ECOLIN_RS17495at 3526.181 kb on - strand, within ECOLIN_RS17495at 3526.200 kb on + strand, within ECOLIN_RS17495at 3526.200 kb on + strand, within ECOLIN_RS17495at 3526.201 kb on - strand, within ECOLIN_RS17495at 3526.201 kb on - strand, within ECOLIN_RS17495at 3526.201 kb on - strand, within ECOLIN_RS17495at 3526.201 kb on - strand, within ECOLIN_RS17495at 3526.239 kb on + strand, within ECOLIN_RS17495at 3526.298 kb on - strand, within ECOLIN_RS17495at 3526.897 kb on - strand, within ECOLIN_RS17500at 3527.066 kb on + strand, within ECOLIN_RS17500at 3527.066 kb on + strand, within ECOLIN_RS17500at 3527.503 kb on - strand, within ECOLIN_RS17505at 3527.503 kb on - strand, within ECOLIN_RS17505at 3527.503 kb on - strand, within ECOLIN_RS17505at 3527.609 kb on + strand, within ECOLIN_RS17505at 3527.609 kb on + strand, within ECOLIN_RS17505at 3527.635 kb on + strand, within ECOLIN_RS17505at 3527.636 kb on - strand, within ECOLIN_RS17505at 3527.820 kb on - strandat 3527.919 kb on - strand, within ECOLIN_RS17510at 3527.953 kb on - strand, within ECOLIN_RS17510at 3528.019 kb on - strand, within ECOLIN_RS17510at 3528.019 kb on - strand, within ECOLIN_RS17510at 3528.259 kb on + strand, within ECOLIN_RS17510at 3528.345 kb on + strand, within ECOLIN_RS17510at 3528.356 kb on - strand, within ECOLIN_RS17510

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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3,526,072 - ECOLIN_RS17495 0.19 -0.8
3,526,181 - ECOLIN_RS17495 0.38 -0.6
3,526,181 - ECOLIN_RS17495 0.38 -0.3
3,526,200 + ECOLIN_RS17495 0.41 -1.2
3,526,200 + ECOLIN_RS17495 0.41 +0.4
3,526,201 - ECOLIN_RS17495 0.41 +0.3
3,526,201 - ECOLIN_RS17495 0.41 +2.3
3,526,201 - ECOLIN_RS17495 0.41 +1.3
3,526,201 - ECOLIN_RS17495 0.41 -0.2
3,526,239 + ECOLIN_RS17495 0.48 +0.6
3,526,298 - ECOLIN_RS17495 0.58 -0.4
3,526,897 - ECOLIN_RS17500 0.43 +0.6
3,527,066 + ECOLIN_RS17500 0.63 +1.0
3,527,066 + ECOLIN_RS17500 0.63 -1.2
3,527,503 - ECOLIN_RS17505 0.26 -0.3
3,527,503 - ECOLIN_RS17505 0.26 -1.1
3,527,503 - ECOLIN_RS17505 0.26 -6.7
3,527,609 + ECOLIN_RS17505 0.51 -0.1
3,527,609 + ECOLIN_RS17505 0.51 -0.5
3,527,635 + ECOLIN_RS17505 0.57 -0.9
3,527,636 - ECOLIN_RS17505 0.57 +0.4
3,527,820 - +0.5
3,527,919 - ECOLIN_RS17510 0.16 +0.2
3,527,953 - ECOLIN_RS17510 0.21 +0.2
3,528,019 - ECOLIN_RS17510 0.32 +0.1
3,528,019 - ECOLIN_RS17510 0.32 +0.1
3,528,259 + ECOLIN_RS17510 0.70 -0.2
3,528,345 + ECOLIN_RS17510 0.84 +0.1
3,528,356 - ECOLIN_RS17510 0.85 -0.2

Or see this region's nucleotide sequence