Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS14015 and ECOLIN_RS14020 are separated by 11 nucleotides ECOLIN_RS14020 and ECOLIN_RS14025 are separated by 106 nucleotides ECOLIN_RS14025 and ECOLIN_RS14030 are separated by 38 nucleotides ECOLIN_RS14030 and ECOLIN_RS14035 overlap by 4 nucleotides ECOLIN_RS14035 and ECOLIN_RS14040 overlap by 4 nucleotides
ECOLIN_RS14015: ECOLIN_RS14015 - aldehyde dehydrogenase family protein, at 2,813,171 to 2,814,574
_RS14015
ECOLIN_RS14020: ECOLIN_RS14020 - ethanolamine utilization microcompartment protein EutN, at 2,814,586 to 2,814,873
_RS14020
ECOLIN_RS14025: ECOLIN_RS14025 - ethanolamine utilization microcompartment protein EutM, at 2,814,980 to 2,815,273
_RS14025
ECOLIN_RS14030: ECOLIN_RS14030 - phosphate acetyltransferase, at 2,815,312 to 2,816,328
_RS14030
ECOLIN_RS14035: ECOLIN_RS14035 - ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT, at 2,816,325 to 2,817,128
_RS14035
ECOLIN_RS14040: ECOLIN_RS14040 - ethanolamine utilization acetate kinase EutQ, at 2,817,125 to 2,817,826
_RS14040
Position (kb) 2815
2816
2817 Strain fitness (log2 ratio) -1
0
1 at 2814.833 kb on - strand, within ECOLIN_RS14020 at 2814.891 kb on - strand at 2814.891 kb on - strand at 2815.205 kb on - strand, within ECOLIN_RS14025 at 2817.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 2,814,833 - ECOLIN_RS14020 0.86 -0.6 2,814,891 - -0.4 2,814,891 - -0.2 2,815,205 - ECOLIN_RS14025 0.77 +1.1 2,817,185 - +0.3
Or see this region's nucleotide sequence