Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12270

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12265 and ECOLIN_RS12270 are separated by 81 nucleotidesECOLIN_RS12270 and ECOLIN_RS12275 are separated by 105 nucleotides ECOLIN_RS12265: ECOLIN_RS12265 - lipid kinase YegS, at 2,433,193 to 2,434,092 _RS12265 ECOLIN_RS12270: ECOLIN_RS12270 - DeoR/GlpR family DNA-binding transcription regulator, at 2,434,174 to 2,434,947 _RS12270 ECOLIN_RS12275: ECOLIN_RS12275 - galactitol-1-phosphate 5-dehydrogenase, at 2,435,053 to 2,436,093 _RS12275 Position (kb) 2434 2435Strain fitness (log2 ratio) -1 0 1at 2433.711 kb on + strand, within ECOLIN_RS12265at 2435.225 kb on + strand, within ECOLIN_RS12275at 2435.601 kb on + strand, within ECOLIN_RS12275

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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2,433,711 + ECOLIN_RS12265 0.58 -1.4
2,435,225 + ECOLIN_RS12275 0.17 -0.1
2,435,601 + ECOLIN_RS12275 0.53 +0.1

Or see this region's nucleotide sequence