Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS03105

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS03100 and ECOLIN_RS03105 are separated by 658 nucleotidesECOLIN_RS03105 and ECOLIN_RS03110 are separated by 0 nucleotides ECOLIN_RS03100: ECOLIN_RS03100 - omptin family outer membrane protease OmpT, at 634,315 to 635,268 _RS03100 ECOLIN_RS03105: ECOLIN_RS03105 - DUF4434 family protein, at 635,927 to 636,817 _RS03105 ECOLIN_RS03110: ECOLIN_RS03110 - bacteriophage adsorption protein NfrA, at 636,818 to 639,790 _RS03110 Position (kb) 635 636 637Strain fitness (log2 ratio) -2 -1 0 1 2at 635.507 kb on + strandat 635.520 kb on - strandat 635.750 kb on + strandat 636.137 kb on + strand, within ECOLIN_RS03105at 636.581 kb on - strand, within ECOLIN_RS03105at 636.597 kb on - strand, within ECOLIN_RS03105at 637.126 kb on - strand, within ECOLIN_RS03110at 637.471 kb on + strand, within ECOLIN_RS03110

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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635,507 + -0.5
635,520 - -2.5
635,750 + +0.1
636,137 + ECOLIN_RS03105 0.24 -0.6
636,581 - ECOLIN_RS03105 0.73 -1.2
636,597 - ECOLIN_RS03105 0.75 +0.1
637,126 - ECOLIN_RS03110 0.10 +2.0
637,471 + ECOLIN_RS03110 0.22 -0.3

Or see this region's nucleotide sequence