Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS01990

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS01980 and ECOLIN_RS01985 are separated by 11 nucleotidesECOLIN_RS01985 and ECOLIN_RS01990 are separated by 108 nucleotidesECOLIN_RS01990 and ECOLIN_RS01995 are separated by 226 nucleotides ECOLIN_RS01980: ECOLIN_RS01980 - reactive chlorine species resistance protein RclC, at 400,695 to 401,288 _RS01980 ECOLIN_RS01985: ECOLIN_RS01985 - reactive chlorine resistance periplasmic protein RclB, at 401,300 to 401,536 _RS01985 ECOLIN_RS01990: ECOLIN_RS01990 - reactive chlorine resistance oxidoreductase RclA, at 401,645 to 402,970 _RS01990 ECOLIN_RS01995: ECOLIN_RS01995 - reactive chlorine-specific transcriptional regulator RclR, at 403,197 to 404,051 _RS01995 Position (kb) 401 402 403Strain fitness (log2 ratio) -1 0 1 2at 402.231 kb on - strand, within ECOLIN_RS01990at 402.950 kb on - strandat 402.964 kb on + strandat 403.122 kb on + strandat 403.556 kb on + strand, within ECOLIN_RS01995at 403.556 kb on + strand, within ECOLIN_RS01995

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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402,231 - ECOLIN_RS01990 0.44 -0.0
402,950 - -0.1
402,964 + +2.3
403,122 + +0.4
403,556 + ECOLIN_RS01995 0.42 +0.3
403,556 + ECOLIN_RS01995 0.42 +0.6

Or see this region's nucleotide sequence