Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS22185

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS22180 and ECOLIN_RS22185 are separated by 189 nucleotidesECOLIN_RS22185 and ECOLIN_RS22190 overlap by 1 nucleotidesECOLIN_RS22190 and ECOLIN_RS22195 are separated by 38 nucleotides ECOLIN_RS22180: ECOLIN_RS22180 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 4,455,907 to 4,457,334 _RS22180 ECOLIN_RS22185: ECOLIN_RS22185 - Xaa-Pro dipeptidase, at 4,457,524 to 4,458,855 _RS22185 ECOLIN_RS22190: ECOLIN_RS22190 - IMPACT family protein, at 4,458,855 to 4,459,469 _RS22190 ECOLIN_RS22195: ECOLIN_RS22195 - Trk system potassium transporter TrkH, at 4,459,508 to 4,460,959 _RS22195 Position (kb) 4457 4458 4459Strain fitness (log2 ratio) -1 0 1at 4459.095 kb on - strand, within ECOLIN_RS22190at 4459.172 kb on - strand, within ECOLIN_RS22190at 4459.237 kb on + strand, within ECOLIN_RS22190at 4459.271 kb on + strand, within ECOLIN_RS22190at 4459.271 kb on + strand, within ECOLIN_RS22190at 4459.272 kb on - strand, within ECOLIN_RS22190at 4459.287 kb on + strand, within ECOLIN_RS22190at 4459.289 kb on + strand, within ECOLIN_RS22190at 4459.341 kb on - strand, within ECOLIN_RS22190at 4459.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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4,459,095 - ECOLIN_RS22190 0.39 -0.3
4,459,172 - ECOLIN_RS22190 0.52 -0.1
4,459,237 + ECOLIN_RS22190 0.62 -0.1
4,459,271 + ECOLIN_RS22190 0.68 -0.4
4,459,271 + ECOLIN_RS22190 0.68 +0.2
4,459,272 - ECOLIN_RS22190 0.68 -0.3
4,459,287 + ECOLIN_RS22190 0.70 +0.2
4,459,289 + ECOLIN_RS22190 0.71 +0.3
4,459,341 - ECOLIN_RS22190 0.79 -0.4
4,459,492 + -0.2

Or see this region's nucleotide sequence