Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17005 and ECOLIN_RS17010 are separated by 23 nucleotides ECOLIN_RS17010 and ECOLIN_RS17015 are separated by 9 nucleotides ECOLIN_RS17015 and ECOLIN_RS17020 overlap by 4 nucleotides
ECOLIN_RS17005: ECOLIN_RS17005 - capsule polysaccharide export inner-membrane protein KpsE, at 3,421,826 to 3,422,974
_RS17005
ECOLIN_RS17010: ECOLIN_RS17010 - polysaccharide biosynthesis/export family protein, at 3,422,998 to 3,424,674
_RS17010
ECOLIN_RS17015: ECOLIN_RS17015 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,424,684 to 3,425,424
_RS17015
ECOLIN_RS17020: ECOLIN_RS17020 - capsular polysaccharide biosynthesis protein, at 3,425,421 to 3,427,448
_RS17020
Position (kb) 3422
3423
3424
3425 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 3422.022 kb on + strand, within ECOLIN_RS17005 at 3422.261 kb on + strand, within ECOLIN_RS17005 at 3422.261 kb on + strand, within ECOLIN_RS17005 at 3422.536 kb on + strand, within ECOLIN_RS17005 at 3422.591 kb on + strand, within ECOLIN_RS17005 at 3423.066 kb on + strand at 3423.268 kb on + strand, within ECOLIN_RS17010 at 3423.268 kb on + strand, within ECOLIN_RS17010 at 3423.446 kb on + strand, within ECOLIN_RS17010 at 3423.525 kb on + strand, within ECOLIN_RS17010 at 3423.747 kb on + strand, within ECOLIN_RS17010 at 3424.617 kb on + strand at 3424.786 kb on + strand, within ECOLIN_RS17015 at 3424.960 kb on + strand, within ECOLIN_RS17015 at 3424.960 kb on + strand, within ECOLIN_RS17015 at 3424.965 kb on + strand, within ECOLIN_RS17015 at 3425.018 kb on + strand, within ECOLIN_RS17015 at 3425.212 kb on + strand, within ECOLIN_RS17015 at 3425.294 kb on + strand, within ECOLIN_RS17015
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 3,422,022 + ECOLIN_RS17005 0.17 -8.1 3,422,261 + ECOLIN_RS17005 0.38 -3.9 3,422,261 + ECOLIN_RS17005 0.38 -4.4 3,422,536 + ECOLIN_RS17005 0.62 +0.4 3,422,591 + ECOLIN_RS17005 0.67 -4.1 3,423,066 + -5.4 3,423,268 + ECOLIN_RS17010 0.16 -4.9 3,423,268 + ECOLIN_RS17010 0.16 -5.3 3,423,446 + ECOLIN_RS17010 0.27 -4.7 3,423,525 + ECOLIN_RS17010 0.31 -4.6 3,423,747 + ECOLIN_RS17010 0.45 -6.0 3,424,617 + -0.1 3,424,786 + ECOLIN_RS17015 0.14 -0.8 3,424,960 + ECOLIN_RS17015 0.37 +0.3 3,424,960 + ECOLIN_RS17015 0.37 -0.7 3,424,965 + ECOLIN_RS17015 0.38 +1.9 3,425,018 + ECOLIN_RS17015 0.45 +0.0 3,425,212 + ECOLIN_RS17015 0.71 +0.1 3,425,294 + ECOLIN_RS17015 0.82 +0.9
Or see this region's nucleotide sequence