Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13825

Experiment: CEV1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13815 and ECOLIN_RS13820 are separated by 40 nucleotidesECOLIN_RS13820 and ECOLIN_RS13825 are separated by 52 nucleotidesECOLIN_RS13825 and ECOLIN_RS13830 are separated by 60 nucleotides ECOLIN_RS13815: ECOLIN_RS13815 - DNA-binding transcriptional regulator XapR, at 2,774,536 to 2,775,420 _RS13815 ECOLIN_RS13820: ECOLIN_RS13820 - DUF1427 family protein, at 2,775,461 to 2,775,619 _RS13820 ECOLIN_RS13825: ECOLIN_RS13825 - xanthosine/proton symporter XapB, at 2,775,672 to 2,776,928 _RS13825 ECOLIN_RS13830: ECOLIN_RS13830 - xanthosine phosphorylase, at 2,776,989 to 2,777,822 _RS13830 Position (kb) 2775 2776 2777Strain fitness (log2 ratio) -1 0 1at 2776.441 kb on + strand, within ECOLIN_RS13825at 2776.441 kb on + strand, within ECOLIN_RS13825at 2776.714 kb on + strand, within ECOLIN_RS13825at 2776.715 kb on - strand, within ECOLIN_RS13825

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Per-strain Table

Position Strand Gene LocusTag Fraction CEV1
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2,776,441 + ECOLIN_RS13825 0.61 +0.1
2,776,441 + ECOLIN_RS13825 0.61 -0.3
2,776,714 + ECOLIN_RS13825 0.83 -0.2
2,776,715 - ECOLIN_RS13825 0.83 +0.1

Or see this region's nucleotide sequence