Experiment: CEV1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS01685 and ECOLIN_RS01690 are separated by 24 nucleotides ECOLIN_RS01690 and ECOLIN_RS01695 are separated by 60 nucleotides
ECOLIN_RS01685: ECOLIN_RS01685 - TolC family protein, at 336,240 to 337,487
_RS01685
ECOLIN_RS01690: ECOLIN_RS01690 - type I secretion system permease/ATPase, at 337,512 to 339,659
_RS01690
ECOLIN_RS01695: ECOLIN_RS01695 - HlyD family type I secretion periplasmic adaptor subunit, at 339,720 to 340,967
_RS01695
Position (kb) 337
338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 336.821 kb on + strand, within ECOLIN_RS01685 at 337.075 kb on + strand, within ECOLIN_RS01685 at 337.119 kb on + strand, within ECOLIN_RS01685 at 337.336 kb on + strand, within ECOLIN_RS01685 at 337.509 kb on + strand at 337.567 kb on + strand at 338.035 kb on + strand, within ECOLIN_RS01690 at 338.046 kb on + strand, within ECOLIN_RS01690 at 338.063 kb on + strand, within ECOLIN_RS01690 at 338.206 kb on + strand, within ECOLIN_RS01690 at 338.206 kb on + strand, within ECOLIN_RS01690 at 338.583 kb on + strand, within ECOLIN_RS01690 at 338.700 kb on + strand, within ECOLIN_RS01690 at 338.700 kb on + strand, within ECOLIN_RS01690 at 338.727 kb on - strand, within ECOLIN_RS01690 at 338.727 kb on - strand, within ECOLIN_RS01690 at 338.732 kb on + strand, within ECOLIN_RS01690 at 338.987 kb on + strand, within ECOLIN_RS01690 at 339.688 kb on + strand at 339.743 kb on + strand at 339.878 kb on + strand, within ECOLIN_RS01695 at 339.958 kb on + strand, within ECOLIN_RS01695 at 339.959 kb on - strand, within ECOLIN_RS01695 at 340.386 kb on - strand, within ECOLIN_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction CEV1 remove 336,821 + ECOLIN_RS01685 0.47 -0.2 337,075 + ECOLIN_RS01685 0.67 -0.1 337,119 + ECOLIN_RS01685 0.70 -0.7 337,336 + ECOLIN_RS01685 0.88 -1.8 337,509 + +0.3 337,567 + +0.2 338,035 + ECOLIN_RS01690 0.24 -2.5 338,046 + ECOLIN_RS01690 0.25 -0.0 338,063 + ECOLIN_RS01690 0.26 -0.1 338,206 + ECOLIN_RS01690 0.32 +0.0 338,206 + ECOLIN_RS01690 0.32 -0.6 338,583 + ECOLIN_RS01690 0.50 +0.7 338,700 + ECOLIN_RS01690 0.55 -0.3 338,700 + ECOLIN_RS01690 0.55 +3.7 338,727 - ECOLIN_RS01690 0.57 +0.8 338,727 - ECOLIN_RS01690 0.57 -0.6 338,732 + ECOLIN_RS01690 0.57 -0.4 338,987 + ECOLIN_RS01690 0.69 -0.3 339,688 + -0.5 339,743 + +0.1 339,878 + ECOLIN_RS01695 0.13 -0.0 339,958 + ECOLIN_RS01695 0.19 -0.3 339,959 - ECOLIN_RS01695 0.19 -2.2 340,386 - ECOLIN_RS01695 0.53 -0.4
Or see this region's nucleotide sequence