Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS31285

Experiment: Bas27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS04335 and ECOLIN_RS31285 are separated by 234 nucleotidesECOLIN_RS31285 and ECOLIN_RS04340 are separated by 52 nucleotidesECOLIN_RS04340 and ECOLIN_RS04345 are separated by 49 nucleotides ECOLIN_RS04335: ECOLIN_RS04335 - threonine/homoserine exporter RhtA, at 876,672 to 877,559 _RS04335 ECOLIN_RS31285: ECOLIN_RS31285 - protein YliM, at 877,794 to 877,859 _RS31285 ECOLIN_RS04340: ECOLIN_RS04340 - outer membrane protein OmpX, at 877,912 to 878,427 _RS04340 ECOLIN_RS04345: ECOLIN_RS04345 - phosphoethanolamine transferase, at 878,477 to 880,060 _RS04345 Position (kb) 877 878Strain fitness (log2 ratio) -1 0 1at 877.066 kb on - strand, within ECOLIN_RS04335at 877.546 kb on - strandat 877.874 kb on - strandat 877.994 kb on + strand, within ECOLIN_RS04340at 878.068 kb on + strand, within ECOLIN_RS04340at 878.149 kb on + strand, within ECOLIN_RS04340at 878.149 kb on + strand, within ECOLIN_RS04340at 878.272 kb on + strand, within ECOLIN_RS04340at 878.598 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
remove
877,066 - ECOLIN_RS04335 0.44 +0.4
877,546 - -0.9
877,874 - +1.2
877,994 + ECOLIN_RS04340 0.16 +0.2
878,068 + ECOLIN_RS04340 0.30 -0.1
878,149 + ECOLIN_RS04340 0.46 +0.6
878,149 + ECOLIN_RS04340 0.46 +1.0
878,272 + ECOLIN_RS04340 0.70 +0.5
878,598 - +0.2

Or see this region's nucleotide sequence