Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10095

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10090 and ECOLIN_RS10095 are separated by 130 nucleotidesECOLIN_RS10095 and ECOLIN_RS10100 are separated by 3 nucleotides ECOLIN_RS10090: ECOLIN_RS10090 - L-serine ammonia-lyase, at 1,980,917 to 1,982,281 _RS10090 ECOLIN_RS10095: ECOLIN_RS10095 - cyclic diguanylate phosphodiesterase, at 1,982,412 to 1,984,010 _RS10095 ECOLIN_RS10100: ECOLIN_RS10100 - CNNM family cation transport protein YoaE, at 1,984,014 to 1,985,570 _RS10100 Position (kb) 1982 1983 1984 1985Strain fitness (log2 ratio) -1 0 1at 1983.707 kb on - strand, within ECOLIN_RS10095

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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1,983,707 - ECOLIN_RS10095 0.81 +0.6

Or see this region's nucleotide sequence