Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08535

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08525 and ECOLIN_RS08530 are separated by 156 nucleotidesECOLIN_RS08530 and ECOLIN_RS08535 are separated by 101 nucleotidesECOLIN_RS08535 and ECOLIN_RS08540 are separated by 344 nucleotidesECOLIN_RS08540 and ECOLIN_RS30640 are separated by 188 nucleotides ECOLIN_RS08525: ECOLIN_RS08525 - malate dehydrogenase, at 1,674,992 to 1,676,689 _RS08525 ECOLIN_RS08530: ECOLIN_RS08530 - stationary-phase-induced ribosome-associated protein, at 1,676,846 to 1,676,983 _RS08530 ECOLIN_RS08535: ECOLIN_RS08535 - biofilm-dependent modulation protein, at 1,677,085 to 1,677,300 _RS08535 ECOLIN_RS08540: ECOLIN_RS08540 - peroxiredoxin OsmC, at 1,677,645 to 1,678,076 _RS08540 ECOLIN_RS30640: ECOLIN_RS30640 - oxygen-sensing cyclic-di-GMP phosphodiesterase DosP, at 1,678,265 to 1,680,666 _RS30640 Position (kb) 1677 1678Strain fitness (log2 ratio) -1 0 1at 1676.771 kb on + strandat 1677.060 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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1,676,771 + +0.3
1,677,060 + -0.4

Or see this region's nucleotide sequence