Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS04095

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS04090 and ECOLIN_RS04095 are separated by 183 nucleotidesECOLIN_RS04095 and ECOLIN_RS04100 are separated by 75 nucleotides ECOLIN_RS04090: ECOLIN_RS04090 - LysR family transcriptional regulator, at 826,309 to 827,262 _RS04090 ECOLIN_RS04095: ECOLIN_RS04095 - 4-oxalomesaconate tautomerase, at 827,446 to 828,498 _RS04095 ECOLIN_RS04100: ECOLIN_RS04100 - anion permease, at 828,574 to 830,007 _RS04100 Position (kb) 827 828 829Strain fitness (log2 ratio) -1 0 1at 829.147 kb on + strand, within ECOLIN_RS04100

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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829,147 + ECOLIN_RS04100 0.40 +0.1

Or see this region's nucleotide sequence