Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24755 and ECOLIN_RS24765 are separated by 480 nucleotides ECOLIN_RS24765 and ECOLIN_RS24770 are separated by 64 nucleotides ECOLIN_RS24770 and ECOLIN_RS24775 are separated by 36 nucleotides
ECOLIN_RS24755: ECOLIN_RS24755 - type 1 fimbria switch DNA invertase FimE, at 4,981,488 to 4,982,084
_RS24755
ECOLIN_RS24765: ECOLIN_RS24765 - type 1 fimbrial major subunit FimA, at 4,982,565 to 4,983,113
_RS24765
ECOLIN_RS24770: ECOLIN_RS24770 - fimbrial protein, at 4,983,178 to 4,983,717
_RS24770
ECOLIN_RS24775: ECOLIN_RS24775 - type 1 fimbria chaperone FimC, at 4,983,754 to 4,984,479
_RS24775
Position (kb) 4982
4983
4984 Strain fitness (log2 ratio) -2
-1
0
1 at 4981.613 kb on + strand, within ECOLIN_RS24755 at 4981.792 kb on + strand, within ECOLIN_RS24755 at 4981.845 kb on - strand, within ECOLIN_RS24755 at 4981.896 kb on - strand, within ECOLIN_RS24755 at 4982.272 kb on + strand at 4982.511 kb on + strand at 4982.573 kb on + strand at 4982.640 kb on - strand, within ECOLIN_RS24765 at 4982.854 kb on + strand, within ECOLIN_RS24765 at 4983.194 kb on + strand at 4983.200 kb on + strand at 4983.426 kb on + strand, within ECOLIN_RS24770 at 4983.426 kb on + strand, within ECOLIN_RS24770 at 4983.531 kb on + strand, within ECOLIN_RS24770 at 4984.059 kb on + strand, within ECOLIN_RS24775
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 4,981,613 + ECOLIN_RS24755 0.21 -2.6 4,981,792 + ECOLIN_RS24755 0.51 -0.4 4,981,845 - ECOLIN_RS24755 0.60 +0.6 4,981,896 - ECOLIN_RS24755 0.68 +0.3 4,982,272 + -0.9 4,982,511 + -0.4 4,982,573 + +0.1 4,982,640 - ECOLIN_RS24765 0.14 -1.4 4,982,854 + ECOLIN_RS24765 0.53 +0.2 4,983,194 + +0.0 4,983,200 + +0.1 4,983,426 + ECOLIN_RS24770 0.46 +0.1 4,983,426 + ECOLIN_RS24770 0.46 +1.0 4,983,531 + ECOLIN_RS24770 0.65 +0.9 4,984,059 + ECOLIN_RS24775 0.42 -0.2
Or see this region's nucleotide sequence