Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23425 and ECOLIN_RS23430 are separated by 32 nucleotides ECOLIN_RS23430 and ECOLIN_RS23435 are separated by 11 nucleotides
ECOLIN_RS23425: ECOLIN_RS23425 - 2-oxoglutarate dehydrogenase E1 component, at 4,715,478 to 4,718,222
_RS23425
ECOLIN_RS23430: ECOLIN_RS23430 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 4,718,255 to 4,719,409
_RS23430
ECOLIN_RS23435: ECOLIN_RS23435 - dihydrolipoyl dehydrogenase, at 4,719,421 to 4,720,839
_RS23435
Position (kb) 4718
4719
4720 Strain fitness (log2 ratio) -2
-1
0
1 at 4717.423 kb on - strand, within ECOLIN_RS23425 at 4717.542 kb on + strand, within ECOLIN_RS23425 at 4717.863 kb on - strand, within ECOLIN_RS23425 at 4717.884 kb on + strand, within ECOLIN_RS23425 at 4717.884 kb on + strand, within ECOLIN_RS23425 at 4717.888 kb on - strand, within ECOLIN_RS23425 at 4717.907 kb on + strand, within ECOLIN_RS23425 at 4717.960 kb on - strand at 4718.165 kb on - strand at 4718.168 kb on + strand at 4718.168 kb on + strand at 4718.238 kb on - strand at 4718.254 kb on + strand at 4718.277 kb on + strand at 4718.278 kb on - strand at 4718.278 kb on - strand at 4718.278 kb on - strand at 4718.340 kb on + strand at 4718.340 kb on + strand at 4718.426 kb on - strand, within ECOLIN_RS23430 at 4718.611 kb on + strand, within ECOLIN_RS23430 at 4718.629 kb on - strand, within ECOLIN_RS23430 at 4718.689 kb on + strand, within ECOLIN_RS23430 at 4718.742 kb on + strand, within ECOLIN_RS23430 at 4718.743 kb on - strand, within ECOLIN_RS23430 at 4718.839 kb on - strand, within ECOLIN_RS23430 at 4718.893 kb on + strand, within ECOLIN_RS23430 at 4718.974 kb on + strand, within ECOLIN_RS23430 at 4718.975 kb on - strand, within ECOLIN_RS23430 at 4719.031 kb on - strand, within ECOLIN_RS23430 at 4719.031 kb on - strand, within ECOLIN_RS23430 at 4719.095 kb on + strand, within ECOLIN_RS23430 at 4719.296 kb on + strand at 4719.297 kb on - strand at 4719.312 kb on - strand at 4719.363 kb on + strand at 4719.509 kb on + strand at 4719.512 kb on + strand at 4719.512 kb on + strand at 4719.513 kb on - strand at 4719.513 kb on - strand at 4719.516 kb on + strand at 4719.516 kb on + strand at 4719.516 kb on + strand at 4719.516 kb on + strand at 4719.516 kb on + strand at 4719.516 kb on + strand at 4719.516 kb on + strand at 4719.517 kb on - strand at 4719.517 kb on - strand at 4719.703 kb on - strand, within ECOLIN_RS23435 at 4719.716 kb on + strand, within ECOLIN_RS23435 at 4719.717 kb on - strand, within ECOLIN_RS23435 at 4719.769 kb on + strand, within ECOLIN_RS23435 at 4719.791 kb on + strand, within ECOLIN_RS23435 at 4719.792 kb on - strand, within ECOLIN_RS23435 at 4720.235 kb on + strand, within ECOLIN_RS23435 at 4720.235 kb on + strand, within ECOLIN_RS23435 at 4720.335 kb on - strand, within ECOLIN_RS23435
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 4,717,423 - ECOLIN_RS23425 0.71 +0.2 4,717,542 + ECOLIN_RS23425 0.75 -0.0 4,717,863 - ECOLIN_RS23425 0.87 +0.7 4,717,884 + ECOLIN_RS23425 0.88 +0.6 4,717,884 + ECOLIN_RS23425 0.88 +0.2 4,717,888 - ECOLIN_RS23425 0.88 +0.2 4,717,907 + ECOLIN_RS23425 0.88 +1.5 4,717,960 - +0.5 4,718,165 - -0.3 4,718,168 + +1.0 4,718,168 + +0.2 4,718,238 - -0.5 4,718,254 + +0.3 4,718,277 + -0.0 4,718,278 - -0.4 4,718,278 - +1.0 4,718,278 - -0.1 4,718,340 + +0.1 4,718,340 + -0.6 4,718,426 - ECOLIN_RS23430 0.15 +0.2 4,718,611 + ECOLIN_RS23430 0.31 -0.2 4,718,629 - ECOLIN_RS23430 0.32 -0.2 4,718,689 + ECOLIN_RS23430 0.38 +0.3 4,718,742 + ECOLIN_RS23430 0.42 -0.4 4,718,743 - ECOLIN_RS23430 0.42 -0.0 4,718,839 - ECOLIN_RS23430 0.51 +0.2 4,718,893 + ECOLIN_RS23430 0.55 +0.1 4,718,974 + ECOLIN_RS23430 0.62 +0.2 4,718,975 - ECOLIN_RS23430 0.62 -0.3 4,719,031 - ECOLIN_RS23430 0.67 +0.1 4,719,031 - ECOLIN_RS23430 0.67 +0.0 4,719,095 + ECOLIN_RS23430 0.73 -0.3 4,719,296 + +0.0 4,719,297 - -0.0 4,719,312 - +0.1 4,719,363 + -0.0 4,719,509 + -0.6 4,719,512 + -0.3 4,719,512 + -0.1 4,719,513 - +0.0 4,719,513 - -1.8 4,719,516 + +0.7 4,719,516 + +0.3 4,719,516 + +0.3 4,719,516 + -0.4 4,719,516 + -0.1 4,719,516 + +0.3 4,719,516 + -0.1 4,719,517 - -1.6 4,719,517 - -0.2 4,719,703 - ECOLIN_RS23435 0.20 +0.3 4,719,716 + ECOLIN_RS23435 0.21 -0.2 4,719,717 - ECOLIN_RS23435 0.21 -0.2 4,719,769 + ECOLIN_RS23435 0.25 -0.5 4,719,791 + ECOLIN_RS23435 0.26 +0.2 4,719,792 - ECOLIN_RS23435 0.26 +0.2 4,720,235 + ECOLIN_RS23435 0.57 +0.4 4,720,235 + ECOLIN_RS23435 0.57 -0.4 4,720,335 - ECOLIN_RS23435 0.64 +0.4
Or see this region's nucleotide sequence