Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS04310

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS04300 and ECOLIN_RS04310 are separated by 116 nucleotidesECOLIN_RS04310 and ECOLIN_RS04315 overlap by 4 nucleotidesECOLIN_RS04315 and ECOLIN_RS04320 are separated by 138 nucleotides ECOLIN_RS04300: ECOLIN_RS04300 - mechanosensitive channel protein, at 870,859 to 873,084 _RS04300 ECOLIN_RS04310: ECOLIN_RS04310 - glutamine ABC transporter ATP-binding protein GlnQ, at 873,201 to 873,923 _RS04310 ECOLIN_RS04315: ECOLIN_RS04315 - glutamine ABC transporter permease GlnP, at 873,920 to 874,579 _RS04315 ECOLIN_RS04320: ECOLIN_RS04320 - glutamine ABC transporter substrate-binding protein GlnH, at 874,718 to 875,464 _RS04320 Position (kb) 873 874Strain fitness (log2 ratio) -1 0 1 2at 873.912 kb on - strandat 873.959 kb on - strandat 874.580 kb on - strandat 874.580 kb on - strandat 874.626 kb on + strandat 874.626 kb on + strandat 874.720 kb on - strandat 874.720 kb on - strandat 874.912 kb on - strand, within ECOLIN_RS04320

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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873,912 - +0.2
873,959 - -0.5
874,580 - +0.7
874,580 - -0.1
874,626 + -0.2
874,626 + +1.8
874,720 - -0.7
874,720 - +2.0
874,912 - ECOLIN_RS04320 0.26 +0.0

Or see this region's nucleotide sequence