Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02840

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02835 and ECOLIN_RS02840 are separated by 237 nucleotidesECOLIN_RS02840 and ECOLIN_RS02845 are separated by 217 nucleotides ECOLIN_RS02835: ECOLIN_RS02835 - YbaL family putative K(+) efflux transporter, at 581,320 to 582,996 _RS02835 ECOLIN_RS02840: ECOLIN_RS02840 - fosmidomycin MFS transporter, at 583,234 to 584,454 _RS02840 ECOLIN_RS02845: ECOLIN_RS02845 - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 584,672 to 586,324 _RS02845 Position (kb) 583 584 585Strain fitness (log2 ratio) -1 0 1at 582.802 kb on - strand, within ECOLIN_RS02835at 582.910 kb on - strandat 582.910 kb on - strandat 583.052 kb on - strandat 583.931 kb on + strand, within ECOLIN_RS02840at 584.153 kb on - strand, within ECOLIN_RS02840at 584.630 kb on + strandat 584.952 kb on + strand, within ECOLIN_RS02845at 584.952 kb on + strand, within ECOLIN_RS02845at 585.098 kb on + strand, within ECOLIN_RS02845

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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582,802 - ECOLIN_RS02835 0.88 +0.6
582,910 - +0.0
582,910 - +0.6
583,052 - +0.2
583,931 + ECOLIN_RS02840 0.57 -0.2
584,153 - ECOLIN_RS02840 0.75 -0.5
584,630 + -0.1
584,952 + ECOLIN_RS02845 0.17 +1.5
584,952 + ECOLIN_RS02845 0.17 +0.1
585,098 + ECOLIN_RS02845 0.26 +0.2

Or see this region's nucleotide sequence