Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13115

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13105 and ECOLIN_RS13110 are separated by 99 nucleotidesECOLIN_RS13110 and ECOLIN_RS13115 are separated by 278 nucleotidesECOLIN_RS13115 and ECOLIN_RS13120 are separated by 38 nucleotidesECOLIN_RS13120 and ECOLIN_RS13125 are separated by 307 nucleotides ECOLIN_RS13105: ECOLIN_RS13105 - nicotinamide mononucleotide deamidase-related protein YfaY, at 2,620,868 to 2,622,070 _RS13105 ECOLIN_RS13110: ECOLIN_RS13110 - YfaZ family outer membrane protein, at 2,622,170 to 2,622,712 _RS13110 ECOLIN_RS13115: ECOLIN_RS13115 - nucleoside triphosphatase NudI, at 2,622,991 to 2,623,416 _RS13115 ECOLIN_RS13120: ECOLIN_RS13120 - lipopolysaccharide core heptose(II)-phosphate phosphatase Ais, at 2,623,455 to 2,624,057 _RS13120 ECOLIN_RS13125: ECOLIN_RS13125 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 2,624,365 to 2,625,504 _RS13125 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -1 0 1at 2622.740 kb on - strandat 2623.267 kb on + strand, within ECOLIN_RS13115

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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2,622,740 - +0.2
2,623,267 + ECOLIN_RS13115 0.65 +0.8

Or see this region's nucleotide sequence