Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08445

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08425 and ECOLIN_RS31415 are separated by 109 nucleotidesECOLIN_RS31415 and ECOLIN_RS08435 are separated by 80 nucleotidesECOLIN_RS08435 and ECOLIN_RS08445 are separated by 316 nucleotidesECOLIN_RS08445 and ECOLIN_RS08450 are separated by 174 nucleotides ECOLIN_RS08425: ECOLIN_RS08425 - hypothetical protein, at 1,654,275 to 1,655,234 _RS08425 ECOLIN_RS31415: ECOLIN_RS31415 - ISAs1 family transposase, at 1,655,344 to 1,655,487 _RS31415 ECOLIN_RS08435: ECOLIN_RS08435 - hypothetical protein, at 1,655,568 to 1,655,783 _RS08435 ECOLIN_RS08445: ECOLIN_RS08445 - flavin reductase family protein, at 1,656,100 to 1,656,669 _RS08445 ECOLIN_RS08450: ECOLIN_RS08450 - N-hydroxyarylamine O-acetyltransferase, at 1,656,844 to 1,657,689 _RS08450 Position (kb) 1656 1657Strain fitness (log2 ratio) -1 0 1at 1657.571 kb on - strand, within ECOLIN_RS08450

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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1,657,571 - ECOLIN_RS08450 0.86 -1.5

Or see this region's nucleotide sequence