Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07430

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07420 and ECOLIN_RS07425 overlap by 23 nucleotidesECOLIN_RS07425 and ECOLIN_RS07430 overlap by 4 nucleotidesECOLIN_RS07430 and ECOLIN_RS07435 overlap by 4 nucleotidesECOLIN_RS07435 and ECOLIN_RS07440 overlap by 8 nucleotides ECOLIN_RS07420: ECOLIN_RS07420 - NAD(P)-dependent oxidoreductase, at 1,452,252 to 1,453,268 _RS07420 ECOLIN_RS07425: ECOLIN_RS07425 - MBL fold metallo-hydrolase, at 1,453,246 to 1,454,052 _RS07425 ECOLIN_RS07430: ECOLIN_RS07430 - F390 synthetase-related protein, at 1,454,049 to 1,455,335 _RS07430 ECOLIN_RS07435: ECOLIN_RS07435 - phosphatase PAP2 family protein, at 1,455,332 to 1,455,934 _RS07435 ECOLIN_RS07440: ECOLIN_RS07440 - sterol desaturase family protein, at 1,455,927 to 1,457,051 _RS07440 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -1 0 1at 1454.049 kb on - strandat 1454.267 kb on + strand, within ECOLIN_RS07430

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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1,454,049 - -0.2
1,454,267 + ECOLIN_RS07430 0.17 -1.0

Or see this region's nucleotide sequence