Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS06355

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS06350 and ECOLIN_RS06355 are separated by 294 nucleotidesECOLIN_RS06355 and ECOLIN_RS06360 are separated by 59 nucleotides ECOLIN_RS06350: ECOLIN_RS06350 - metal-dependent hydrolase, at 1,276,481 to 1,277,278 _RS06350 ECOLIN_RS06355: ECOLIN_RS06355 - PTS glucose transporter subunit IIBC, at 1,277,573 to 1,279,006 _RS06355 ECOLIN_RS06360: ECOLIN_RS06360 - ferric-rhodotorulic acid/ferric-coprogen receptor FhuE, at 1,279,066 to 1,280,466 _RS06360 Position (kb) 1277 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1at 1276.781 kb on + strand, within ECOLIN_RS06350at 1277.487 kb on - strandat 1277.962 kb on + strand, within ECOLIN_RS06355at 1277.963 kb on - strand, within ECOLIN_RS06355

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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1,276,781 + ECOLIN_RS06350 0.38 -0.2
1,277,487 - -0.3
1,277,962 + ECOLIN_RS06355 0.27 -0.8
1,277,963 - ECOLIN_RS06355 0.27 -2.6

Or see this region's nucleotide sequence