Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02970

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02965 and ECOLIN_RS02970 are separated by 169 nucleotidesECOLIN_RS02970 and ECOLIN_RS02975 are separated by 59 nucleotides ECOLIN_RS02965: ECOLIN_RS02965 - 2-hydroxy-3-oxopropionate reductase, at 610,602 to 611,480 _RS02965 ECOLIN_RS02970: ECOLIN_RS02970 - putative allantoin permease, at 611,650 to 613,104 _RS02970 ECOLIN_RS02975: ECOLIN_RS02975 - allantoinase AllB, at 613,164 to 614,525 _RS02975 Position (kb) 611 612 613 614Strain fitness (log2 ratio) -2 -1 0 1at 610.874 kb on + strand, within ECOLIN_RS02965at 612.223 kb on + strand, within ECOLIN_RS02970at 612.453 kb on - strand, within ECOLIN_RS02970at 613.164 kb on - strandat 613.794 kb on + strand, within ECOLIN_RS02975at 613.794 kb on + strand, within ECOLIN_RS02975at 613.794 kb on + strand, within ECOLIN_RS02975at 613.794 kb on + strand, within ECOLIN_RS02975at 613.950 kb on - strand, within ECOLIN_RS02975at 613.971 kb on + strand, within ECOLIN_RS02975

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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610,874 + ECOLIN_RS02965 0.31 +0.7
612,223 + ECOLIN_RS02970 0.39 -1.6
612,453 - ECOLIN_RS02970 0.55 +0.9
613,164 - -0.6
613,794 + ECOLIN_RS02975 0.46 -0.4
613,794 + ECOLIN_RS02975 0.46 -0.0
613,794 + ECOLIN_RS02975 0.46 -0.3
613,794 + ECOLIN_RS02975 0.46 +0.3
613,950 - ECOLIN_RS02975 0.58 -1.8
613,971 + ECOLIN_RS02975 0.59 +0.8

Or see this region's nucleotide sequence