Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS20975

Experiment: EV219

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS20970 and ECOLIN_RS20975 are separated by 317 nucleotidesECOLIN_RS20975 and ECOLIN_RS20980 are separated by 38 nucleotides ECOLIN_RS20970: ECOLIN_RS20970 - hypothetical protein, at 4,218,112 to 4,219,437 _RS20970 ECOLIN_RS20975: ECOLIN_RS20975 - hypothetical protein, at 4,219,755 to 4,219,952 _RS20975 ECOLIN_RS20980: ECOLIN_RS20980 - hypothetical protein, at 4,219,991 to 4,221,817 _RS20980 Position (kb) 4219 4220Strain fitness (log2 ratio) -1 0 1at 4219.952 kb on + strandat 4220.018 kb on - strandat 4220.104 kb on + strandat 4220.107 kb on + strandat 4220.278 kb on + strand, within ECOLIN_RS20980at 4220.441 kb on + strand, within ECOLIN_RS20980at 4220.843 kb on - strand, within ECOLIN_RS20980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV219
remove
4,219,952 + -0.2
4,220,018 - +1.6
4,220,104 + -0.0
4,220,107 + +0.2
4,220,278 + ECOLIN_RS20980 0.16 +0.2
4,220,441 + ECOLIN_RS20980 0.25 +0.3
4,220,843 - ECOLIN_RS20980 0.47 -0.2

Or see this region's nucleotide sequence