Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS14265

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS14260 and ECOLIN_RS14265 are separated by 208 nucleotidesECOLIN_RS14265 and ECOLIN_RS14270 are separated by 62 nucleotides ECOLIN_RS14260: ECOLIN_RS14260 - intimin-like inverse autotransporter SinH, at 2,873,911 to 2,876,088 _RS14260 ECOLIN_RS14265: ECOLIN_RS14265 - zinc ribbon domain-containing protein, at 2,876,297 to 2,876,512 _RS14265 ECOLIN_RS14270: ECOLIN_RS14270 - ribosome biogenesis GTPase Der, at 2,876,575 to 2,878,047 _RS14270 Position (kb) 2876 2877Strain fitness (log2 ratio) -1 0 1at 2875.490 kb on + strand, within ECOLIN_RS14260

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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2,875,490 + ECOLIN_RS14260 0.72 +1.0

Or see this region's nucleotide sequence