Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08975

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08965 and ECOLIN_RS08970 are separated by 36 nucleotidesECOLIN_RS08970 and ECOLIN_RS08975 overlap by 4 nucleotidesECOLIN_RS08975 and ECOLIN_RS08980 are separated by 128 nucleotidesECOLIN_RS08980 and ECOLIN_RS08985 are separated by 3 nucleotides ECOLIN_RS08965: ECOLIN_RS08965 - amino acid permease, at 1,768,309 to 1,769,691 _RS08965 ECOLIN_RS08970: ECOLIN_RS08970 - dihydromonapterin reductase, at 1,769,728 to 1,770,450 _RS08970 ECOLIN_RS08975: ECOLIN_RS08975 - GlpM family protein, at 1,770,447 to 1,770,782 _RS08975 ECOLIN_RS08980: ECOLIN_RS08980 - two-component system response regulator RstA, at 1,770,911 to 1,771,630 _RS08980 ECOLIN_RS08985: ECOLIN_RS08985 - two-component system sensor histidine kinase RstB, at 1,771,634 to 1,772,935 _RS08985 Position (kb) 1770 1771Strain fitness (log2 ratio) -1 0 1at 1769.501 kb on + strand, within ECOLIN_RS08965at 1770.458 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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1,769,501 + ECOLIN_RS08965 0.86 +0.8
1,770,458 + +0.2

Or see this region's nucleotide sequence