Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02390

Experiment: EV219

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02385 and ECOLIN_RS02390 are separated by 124 nucleotidesECOLIN_RS02390 and ECOLIN_RS02395 are separated by 268 nucleotides ECOLIN_RS02385: ECOLIN_RS02385 - recombination-associated protein RdgC, at 483,901 to 484,812 _RS02385 ECOLIN_RS02390: ECOLIN_RS02390 - fructokinase, at 484,937 to 485,845 _RS02390 ECOLIN_RS02395: ECOLIN_RS02395 - MFS transporter AraJ, at 486,114 to 487,298 _RS02395 Position (kb) 484 485 486Strain fitness (log2 ratio) -1 0 1at 484.322 kb on - strand, within ECOLIN_RS02385at 484.366 kb on - strand, within ECOLIN_RS02385at 484.402 kb on - strand, within ECOLIN_RS02385at 484.785 kb on - strandat 485.211 kb on + strand, within ECOLIN_RS02390at 485.211 kb on + strand, within ECOLIN_RS02390at 485.706 kb on + strand, within ECOLIN_RS02390at 485.717 kb on + strand, within ECOLIN_RS02390at 486.116 kb on - strandat 486.233 kb on - strand, within ECOLIN_RS02395at 486.233 kb on - strand, within ECOLIN_RS02395at 486.237 kb on - strand, within ECOLIN_RS02395at 486.237 kb on - strand, within ECOLIN_RS02395at 486.582 kb on - strand, within ECOLIN_RS02395at 486.615 kb on - strand, within ECOLIN_RS02395

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Per-strain Table

Position Strand Gene LocusTag Fraction EV219
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484,322 - ECOLIN_RS02385 0.46 +1.0
484,366 - ECOLIN_RS02385 0.51 +1.6
484,402 - ECOLIN_RS02385 0.55 +1.6
484,785 - +0.6
485,211 + ECOLIN_RS02390 0.30 -0.5
485,211 + ECOLIN_RS02390 0.30 +0.3
485,706 + ECOLIN_RS02390 0.85 +0.5
485,717 + ECOLIN_RS02390 0.86 -0.2
486,116 - +0.3
486,233 - ECOLIN_RS02395 0.10 -0.1
486,233 - ECOLIN_RS02395 0.10 +0.7
486,237 - ECOLIN_RS02395 0.10 +1.4
486,237 - ECOLIN_RS02395 0.10 -0.2
486,582 - ECOLIN_RS02395 0.39 +0.4
486,615 - ECOLIN_RS02395 0.42 +0.4

Or see this region's nucleotide sequence