Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16410

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16405 and HMPREF1078_RS16410 are separated by 35 nucleotidesHMPREF1078_RS16410 and HMPREF1078_RS16415 are separated by 871 nucleotides HMPREF1078_RS16405: HMPREF1078_RS16405 - MATE family efflux transporter, at 419,166 to 420,521 _RS16405 HMPREF1078_RS16410: HMPREF1078_RS16410 - YihY/virulence factor BrkB family protein, at 420,557 to 421,915 _RS16410 HMPREF1078_RS16415: HMPREF1078_RS16415 - Do family serine endopeptidase, at 422,787 to 424,358 _RS16415 Position (kb) 420 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 419.561 kb on + strand, within HMPREF1078_RS16405at 419.568 kb on + strand, within HMPREF1078_RS16405at 419.568 kb on + strand, within HMPREF1078_RS16405at 419.832 kb on - strand, within HMPREF1078_RS16405at 419.865 kb on - strand, within HMPREF1078_RS16405at 419.871 kb on + strand, within HMPREF1078_RS16405at 419.872 kb on - strand, within HMPREF1078_RS16405at 419.875 kb on + strand, within HMPREF1078_RS16405at 419.875 kb on + strand, within HMPREF1078_RS16405at 419.875 kb on + strand, within HMPREF1078_RS16405at 419.888 kb on + strand, within HMPREF1078_RS16405at 419.888 kb on + strand, within HMPREF1078_RS16405at 419.888 kb on + strand, within HMPREF1078_RS16405at 419.889 kb on - strand, within HMPREF1078_RS16405at 419.889 kb on - strand, within HMPREF1078_RS16405at 419.937 kb on + strand, within HMPREF1078_RS16405at 419.952 kb on + strand, within HMPREF1078_RS16405at 419.959 kb on - strand, within HMPREF1078_RS16405at 419.959 kb on - strand, within HMPREF1078_RS16405at 420.069 kb on + strand, within HMPREF1078_RS16405at 420.090 kb on + strand, within HMPREF1078_RS16405at 420.091 kb on - strand, within HMPREF1078_RS16405at 420.100 kb on + strand, within HMPREF1078_RS16405at 420.126 kb on - strand, within HMPREF1078_RS16405at 420.141 kb on - strand, within HMPREF1078_RS16405at 420.192 kb on + strand, within HMPREF1078_RS16405at 420.196 kb on - strand, within HMPREF1078_RS16405at 420.244 kb on - strand, within HMPREF1078_RS16405at 420.290 kb on + strand, within HMPREF1078_RS16405at 420.291 kb on - strand, within HMPREF1078_RS16405at 420.409 kb on - strandat 420.416 kb on - strandat 420.416 kb on - strandat 420.478 kb on - strandat 420.501 kb on - strandat 420.527 kb on - strandat 420.530 kb on - strandat 420.593 kb on - strandat 420.593 kb on - strandat 420.702 kb on + strand, within HMPREF1078_RS16410at 420.703 kb on - strand, within HMPREF1078_RS16410at 420.703 kb on - strand, within HMPREF1078_RS16410at 420.712 kb on + strand, within HMPREF1078_RS16410at 420.713 kb on - strand, within HMPREF1078_RS16410at 420.781 kb on + strand, within HMPREF1078_RS16410at 420.807 kb on + strand, within HMPREF1078_RS16410at 420.807 kb on + strand, within HMPREF1078_RS16410at 420.812 kb on + strand, within HMPREF1078_RS16410at 420.813 kb on - strand, within HMPREF1078_RS16410at 420.868 kb on + strand, within HMPREF1078_RS16410at 420.888 kb on - strand, within HMPREF1078_RS16410at 420.888 kb on - strand, within HMPREF1078_RS16410at 420.939 kb on + strand, within HMPREF1078_RS16410at 421.128 kb on + strand, within HMPREF1078_RS16410at 421.132 kb on + strand, within HMPREF1078_RS16410at 421.133 kb on - strand, within HMPREF1078_RS16410at 421.187 kb on + strand, within HMPREF1078_RS16410at 421.246 kb on + strand, within HMPREF1078_RS16410at 421.246 kb on + strand, within HMPREF1078_RS16410at 421.254 kb on + strand, within HMPREF1078_RS16410at 421.262 kb on + strand, within HMPREF1078_RS16410at 421.262 kb on + strand, within HMPREF1078_RS16410at 421.436 kb on + strand, within HMPREF1078_RS16410at 421.466 kb on + strand, within HMPREF1078_RS16410at 421.467 kb on - strand, within HMPREF1078_RS16410at 421.492 kb on + strand, within HMPREF1078_RS16410at 421.492 kb on + strand, within HMPREF1078_RS16410at 421.493 kb on - strand, within HMPREF1078_RS16410at 421.626 kb on - strand, within HMPREF1078_RS16410at 421.787 kb on - strandat 421.787 kb on - strandat 421.789 kb on - strandat 421.809 kb on - strandat 421.840 kb on - strandat 421.840 kb on - strandat 421.840 kb on - strandat 421.916 kb on - strandat 421.916 kb on - strandat 421.918 kb on - strandat 421.918 kb on - strandat 421.919 kb on + strandat 421.919 kb on + strandat 421.919 kb on + strandat 421.919 kb on + strandat 421.919 kb on + strandat 421.919 kb on + strandat 421.920 kb on - strandat 421.920 kb on - strandat 421.920 kb on - strandat 421.920 kb on - strandat 421.920 kb on - strandat 421.949 kb on + strandat 421.949 kb on + strandat 421.950 kb on - strandat 421.952 kb on - strandat 421.952 kb on - strandat 421.978 kb on + strandat 421.978 kb on + strandat 421.979 kb on - strandat 421.979 kb on - strandat 421.993 kb on - strandat 421.993 kb on - strandat 421.994 kb on + strandat 422.005 kb on + strandat 422.005 kb on + strandat 422.008 kb on - strandat 422.420 kb on + strandat 422.442 kb on + strandat 422.455 kb on + strandat 422.491 kb on + strandat 422.491 kb on + strandat 422.492 kb on - strandat 422.495 kb on + strandat 422.495 kb on + strandat 422.495 kb on + strandat 422.495 kb on + strandat 422.496 kb on - strandat 422.496 kb on - strandat 422.496 kb on - strandat 422.496 kb on - strandat 422.496 kb on - strandat 422.497 kb on + strandat 422.497 kb on + strandat 422.497 kb on + strandat 422.531 kb on + strandat 422.531 kb on + strandat 422.531 kb on + strandat 422.532 kb on - strandat 422.576 kb on + strandat 422.581 kb on + strandat 422.582 kb on - strandat 422.787 kb on - strandat 422.816 kb on + strandat 422.879 kb on + strandat 422.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
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419,561 + HMPREF1078_RS16405 0.29 -1.6
419,568 + HMPREF1078_RS16405 0.30 -3.1
419,568 + HMPREF1078_RS16405 0.30 -3.6
419,832 - HMPREF1078_RS16405 0.49 +0.4
419,865 - HMPREF1078_RS16405 0.52 -4.5
419,871 + HMPREF1078_RS16405 0.52 -0.4
419,872 - HMPREF1078_RS16405 0.52 -3.0
419,875 + HMPREF1078_RS16405 0.52 -3.8
419,875 + HMPREF1078_RS16405 0.52 -2.6
419,875 + HMPREF1078_RS16405 0.52 -0.4
419,888 + HMPREF1078_RS16405 0.53 +0.5
419,888 + HMPREF1078_RS16405 0.53 -1.8
419,888 + HMPREF1078_RS16405 0.53 -2.5
419,889 - HMPREF1078_RS16405 0.53 -2.7
419,889 - HMPREF1078_RS16405 0.53 -2.8
419,937 + HMPREF1078_RS16405 0.57 +0.2
419,952 + HMPREF1078_RS16405 0.58 -3.4
419,959 - HMPREF1078_RS16405 0.58 -1.7
419,959 - HMPREF1078_RS16405 0.58 -3.0
420,069 + HMPREF1078_RS16405 0.67 -3.4
420,090 + HMPREF1078_RS16405 0.68 -3.7
420,091 - HMPREF1078_RS16405 0.68 -1.5
420,100 + HMPREF1078_RS16405 0.69 -4.3
420,126 - HMPREF1078_RS16405 0.71 -2.4
420,141 - HMPREF1078_RS16405 0.72 -3.4
420,192 + HMPREF1078_RS16405 0.76 -2.2
420,196 - HMPREF1078_RS16405 0.76 -2.6
420,244 - HMPREF1078_RS16405 0.79 -2.9
420,290 + HMPREF1078_RS16405 0.83 -3.1
420,291 - HMPREF1078_RS16405 0.83 -1.2
420,409 - -2.9
420,416 - -2.0
420,416 - -2.6
420,478 - -0.1
420,501 - -2.4
420,527 - -0.5
420,530 - -2.3
420,593 - -0.9
420,593 - +1.0
420,702 + HMPREF1078_RS16410 0.11 +1.2
420,703 - HMPREF1078_RS16410 0.11 +0.4
420,703 - HMPREF1078_RS16410 0.11 -0.3
420,712 + HMPREF1078_RS16410 0.11 -2.2
420,713 - HMPREF1078_RS16410 0.11 +0.2
420,781 + HMPREF1078_RS16410 0.16 -3.2
420,807 + HMPREF1078_RS16410 0.18 -2.7
420,807 + HMPREF1078_RS16410 0.18 -3.6
420,812 + HMPREF1078_RS16410 0.19 -3.4
420,813 - HMPREF1078_RS16410 0.19 +1.6
420,868 + HMPREF1078_RS16410 0.23 -2.5
420,888 - HMPREF1078_RS16410 0.24 -0.1
420,888 - HMPREF1078_RS16410 0.24 -1.8
420,939 + HMPREF1078_RS16410 0.28 -2.9
421,128 + HMPREF1078_RS16410 0.42 -1.8
421,132 + HMPREF1078_RS16410 0.42 -2.8
421,133 - HMPREF1078_RS16410 0.42 -1.5
421,187 + HMPREF1078_RS16410 0.46 -0.9
421,246 + HMPREF1078_RS16410 0.51 +0.2
421,246 + HMPREF1078_RS16410 0.51 -0.9
421,254 + HMPREF1078_RS16410 0.51 -2.8
421,262 + HMPREF1078_RS16410 0.52 -3.0
421,262 + HMPREF1078_RS16410 0.52 -1.7
421,436 + HMPREF1078_RS16410 0.65 -3.2
421,466 + HMPREF1078_RS16410 0.67 -1.5
421,467 - HMPREF1078_RS16410 0.67 -1.1
421,492 + HMPREF1078_RS16410 0.69 -3.3
421,492 + HMPREF1078_RS16410 0.69 -1.6
421,493 - HMPREF1078_RS16410 0.69 +0.3
421,626 - HMPREF1078_RS16410 0.79 +1.1
421,787 - -0.1
421,787 - +0.5
421,789 - -0.2
421,809 - -0.9
421,840 - +0.8
421,840 - +1.4
421,840 - +0.3
421,916 - -1.7
421,916 - +0.1
421,918 - -0.9
421,918 - -0.9
421,919 + -2.4
421,919 + -3.2
421,919 + -2.6
421,919 + -2.0
421,919 + -3.1
421,919 + +0.2
421,920 - -0.5
421,920 - -1.4
421,920 - -0.5
421,920 - -2.4
421,920 - +0.5
421,949 + -1.1
421,949 + -3.4
421,950 - -0.8
421,952 - +1.1
421,952 - +1.4
421,978 + -3.2
421,978 + -2.8
421,979 - -1.6
421,979 - -0.4
421,993 - +0.6
421,993 - +0.4
421,994 + -1.8
422,005 + -3.4
422,005 + -4.0
422,008 - -1.6
422,420 + -3.3
422,442 + -1.6
422,455 + -3.9
422,491 + +0.4
422,491 + +1.7
422,492 - -0.8
422,495 + +1.3
422,495 + +2.4
422,495 + -0.0
422,495 + +2.7
422,496 - -1.6
422,496 - -1.4
422,496 - +0.9
422,496 - +0.0
422,496 - +0.9
422,497 + +1.2
422,497 + +2.1
422,497 + +1.0
422,531 + +0.8
422,531 + -1.4
422,531 + -3.3
422,532 - +2.0
422,576 + -0.7
422,581 + -0.9
422,582 - +0.2
422,787 - -0.7
422,816 + -1.2
422,879 + -2.5
422,894 - -2.2

Or see this region's nucleotide sequence