Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09825 and HMPREF1078_RS09830 are separated by 45 nucleotides HMPREF1078_RS09830 and HMPREF1078_RS09835 are separated by 144 nucleotides HMPREF1078_RS09835 and HMPREF1078_RS09840 are separated by 34 nucleotides
HMPREF1078_RS09825: HMPREF1078_RS09825 - 6-bladed beta-propeller, at 562,858 to 563,913
_RS09825
HMPREF1078_RS09830: HMPREF1078_RS09830 - hypothetical protein, at 563,959 to 564,714
_RS09830
HMPREF1078_RS09835: HMPREF1078_RS09835 - YebC/PmpR family DNA-binding transcriptional regulator, at 564,859 to 565,593
_RS09835
HMPREF1078_RS09840: HMPREF1078_RS09840 - phenylalanine--tRNA ligase subunit beta, at 565,628 to 568,093
_RS09840
Position (kb) 564
565
566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 563.888 kb on + strand at 563.889 kb on - strand at 563.893 kb on - strand at 563.893 kb on - strand at 563.894 kb on + strand at 563.940 kb on + strand at 563.942 kb on + strand at 563.942 kb on + strand at 563.944 kb on + strand at 563.944 kb on + strand at 563.945 kb on - strand at 563.945 kb on - strand at 563.945 kb on - strand at 563.945 kb on - strand at 563.946 kb on + strand at 563.947 kb on - strand at 563.947 kb on - strand at 563.954 kb on + strand at 563.954 kb on + strand at 563.955 kb on - strand at 563.983 kb on + strand at 563.983 kb on + strand at 563.984 kb on - strand at 563.984 kb on - strand at 564.013 kb on - strand at 564.034 kb on - strand at 564.034 kb on - strand at 564.077 kb on + strand, within HMPREF1078_RS09830 at 564.077 kb on + strand, within HMPREF1078_RS09830 at 564.078 kb on - strand, within HMPREF1078_RS09830 at 564.078 kb on - strand, within HMPREF1078_RS09830 at 564.078 kb on - strand, within HMPREF1078_RS09830 at 564.084 kb on + strand, within HMPREF1078_RS09830 at 564.084 kb on + strand, within HMPREF1078_RS09830 at 564.087 kb on - strand, within HMPREF1078_RS09830 at 564.179 kb on + strand, within HMPREF1078_RS09830 at 564.180 kb on - strand, within HMPREF1078_RS09830 at 564.243 kb on + strand, within HMPREF1078_RS09830 at 564.325 kb on + strand, within HMPREF1078_RS09830 at 564.344 kb on + strand, within HMPREF1078_RS09830 at 564.345 kb on - strand, within HMPREF1078_RS09830 at 564.345 kb on - strand, within HMPREF1078_RS09830 at 564.389 kb on + strand, within HMPREF1078_RS09830 at 564.390 kb on - strand, within HMPREF1078_RS09830 at 564.390 kb on - strand, within HMPREF1078_RS09830 at 564.423 kb on + strand, within HMPREF1078_RS09830 at 564.423 kb on + strand, within HMPREF1078_RS09830 at 564.424 kb on - strand, within HMPREF1078_RS09830 at 564.436 kb on - strand, within HMPREF1078_RS09830 at 564.469 kb on - strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.487 kb on + strand, within HMPREF1078_RS09830 at 564.535 kb on + strand, within HMPREF1078_RS09830 at 564.605 kb on - strand, within HMPREF1078_RS09830 at 564.605 kb on - strand, within HMPREF1078_RS09830 at 564.645 kb on + strand at 564.646 kb on - strand at 564.646 kb on - strand at 564.662 kb on - strand at 564.695 kb on - strand at 564.703 kb on - strand at 564.703 kb on - strand at 564.722 kb on - strand at 564.731 kb on - strand at 564.737 kb on - strand at 564.782 kb on + strand at 564.782 kb on + strand at 564.782 kb on + strand at 564.783 kb on - strand at 564.790 kb on + strand at 564.790 kb on + strand at 564.791 kb on - strand at 564.791 kb on - strand at 564.791 kb on - strand at 564.808 kb on - strand at 564.815 kb on + strand at 564.815 kb on + strand at 564.815 kb on + strand at 564.817 kb on + strand at 564.817 kb on + strand at 564.817 kb on + strand at 564.818 kb on - strand at 564.818 kb on - strand at 564.826 kb on + strand at 564.826 kb on + strand at 564.827 kb on - strand at 564.827 kb on - strand at 564.827 kb on - strand at 564.839 kb on - strand at 564.839 kb on - strand at 564.844 kb on - strand at 564.844 kb on - strand at 564.852 kb on + strand at 564.853 kb on - strand at 564.854 kb on - strand at 564.860 kb on + strand at 564.892 kb on - strand at 564.892 kb on - strand at 565.025 kb on + strand, within HMPREF1078_RS09835 at 565.124 kb on + strand, within HMPREF1078_RS09835 at 565.124 kb on + strand, within HMPREF1078_RS09835 at 565.130 kb on - strand, within HMPREF1078_RS09835 at 565.180 kb on - strand, within HMPREF1078_RS09835 at 565.194 kb on + strand, within HMPREF1078_RS09835 at 565.195 kb on - strand, within HMPREF1078_RS09835 at 565.195 kb on - strand, within HMPREF1078_RS09835 at 565.227 kb on + strand, within HMPREF1078_RS09835 at 565.260 kb on + strand, within HMPREF1078_RS09835 at 565.260 kb on + strand, within HMPREF1078_RS09835 at 565.260 kb on + strand, within HMPREF1078_RS09835 at 565.261 kb on - strand, within HMPREF1078_RS09835 at 565.264 kb on + strand, within HMPREF1078_RS09835 at 565.265 kb on - strand, within HMPREF1078_RS09835 at 565.274 kb on - strand, within HMPREF1078_RS09835 at 565.278 kb on + strand, within HMPREF1078_RS09835 at 565.278 kb on + strand, within HMPREF1078_RS09835 at 565.279 kb on - strand, within HMPREF1078_RS09835 at 565.287 kb on + strand, within HMPREF1078_RS09835 at 565.288 kb on - strand, within HMPREF1078_RS09835 at 565.288 kb on - strand, within HMPREF1078_RS09835 at 565.343 kb on + strand, within HMPREF1078_RS09835 at 565.343 kb on + strand, within HMPREF1078_RS09835 at 565.343 kb on + strand, within HMPREF1078_RS09835 at 565.356 kb on + strand, within HMPREF1078_RS09835 at 565.358 kb on + strand, within HMPREF1078_RS09835 at 565.408 kb on - strand, within HMPREF1078_RS09835 at 565.447 kb on + strand, within HMPREF1078_RS09835 at 565.448 kb on - strand, within HMPREF1078_RS09835 at 565.521 kb on + strand at 565.521 kb on + strand at 565.522 kb on - strand at 565.522 kb on - strand at 565.529 kb on - strand at 565.539 kb on + strand at 565.539 kb on + strand at 565.540 kb on - strand at 565.606 kb on + strand at 565.606 kb on + strand at 565.606 kb on + strand at 565.606 kb on + strand at 565.607 kb on - strand at 565.607 kb on - strand at 565.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 563,888 + -2.4 563,889 - +0.7 563,893 - -0.3 563,893 - -0.0 563,894 + +0.1 563,940 + +0.3 563,942 + -4.0 563,942 + +1.3 563,944 + -0.3 563,944 + +0.8 563,945 - -1.4 563,945 - +0.3 563,945 - -1.7 563,945 - -0.9 563,946 + +1.9 563,947 - +1.0 563,947 - +0.9 563,954 + -0.1 563,954 + -3.4 563,955 - +0.3 563,983 + +1.6 563,983 + +2.0 563,984 - +1.2 563,984 - +1.9 564,013 - -0.3 564,034 - -3.6 564,034 - +1.0 564,077 + HMPREF1078_RS09830 0.16 +1.1 564,077 + HMPREF1078_RS09830 0.16 -0.7 564,078 - HMPREF1078_RS09830 0.16 -1.2 564,078 - HMPREF1078_RS09830 0.16 -1.0 564,078 - HMPREF1078_RS09830 0.16 -2.0 564,084 + HMPREF1078_RS09830 0.17 -1.1 564,084 + HMPREF1078_RS09830 0.17 -3.5 564,087 - HMPREF1078_RS09830 0.17 -0.9 564,179 + HMPREF1078_RS09830 0.29 +0.7 564,180 - HMPREF1078_RS09830 0.29 -2.0 564,243 + HMPREF1078_RS09830 0.38 -1.6 564,325 + HMPREF1078_RS09830 0.48 -0.7 564,344 + HMPREF1078_RS09830 0.51 +0.4 564,345 - HMPREF1078_RS09830 0.51 +1.5 564,345 - HMPREF1078_RS09830 0.51 +1.3 564,389 + HMPREF1078_RS09830 0.57 +1.4 564,390 - HMPREF1078_RS09830 0.57 -2.1 564,390 - HMPREF1078_RS09830 0.57 -0.6 564,423 + HMPREF1078_RS09830 0.61 -1.2 564,423 + HMPREF1078_RS09830 0.61 -1.4 564,424 - HMPREF1078_RS09830 0.62 +0.8 564,436 - HMPREF1078_RS09830 0.63 +0.7 564,469 - HMPREF1078_RS09830 0.67 +1.6 564,487 + HMPREF1078_RS09830 0.70 +0.1 564,487 + HMPREF1078_RS09830 0.70 -2.4 564,487 + HMPREF1078_RS09830 0.70 +1.0 564,487 + HMPREF1078_RS09830 0.70 -0.6 564,535 + HMPREF1078_RS09830 0.76 +0.9 564,605 - HMPREF1078_RS09830 0.85 +0.6 564,605 - HMPREF1078_RS09830 0.85 -2.1 564,645 + -0.3 564,646 - +1.8 564,646 - -0.1 564,662 - +1.7 564,695 - +0.4 564,703 - +1.2 564,703 - +1.9 564,722 - +1.4 564,731 - +0.8 564,737 - +0.4 564,782 + +0.3 564,782 + +1.0 564,782 + +1.4 564,783 - +1.7 564,790 + +1.8 564,790 + -0.0 564,791 - -0.3 564,791 - -3.3 564,791 - +4.0 564,808 - -2.5 564,815 + +1.3 564,815 + +1.2 564,815 + +1.6 564,817 + +0.8 564,817 + +0.3 564,817 + -2.0 564,818 - -2.0 564,818 - -0.5 564,826 + +0.8 564,826 + +1.1 564,827 - -2.4 564,827 - -0.1 564,827 - -1.0 564,839 - +0.1 564,839 - +0.6 564,844 - +1.6 564,844 - -1.2 564,852 + +3.2 564,853 - -1.2 564,854 - -1.2 564,860 + +0.7 564,892 - -1.4 564,892 - -2.7 565,025 + HMPREF1078_RS09835 0.23 -0.6 565,124 + HMPREF1078_RS09835 0.36 -2.4 565,124 + HMPREF1078_RS09835 0.36 -2.6 565,130 - HMPREF1078_RS09835 0.37 -1.7 565,180 - HMPREF1078_RS09835 0.44 -0.3 565,194 + HMPREF1078_RS09835 0.46 -0.3 565,195 - HMPREF1078_RS09835 0.46 -0.9 565,195 - HMPREF1078_RS09835 0.46 -0.1 565,227 + HMPREF1078_RS09835 0.50 -0.1 565,260 + HMPREF1078_RS09835 0.55 -0.7 565,260 + HMPREF1078_RS09835 0.55 -3.3 565,260 + HMPREF1078_RS09835 0.55 -0.3 565,261 - HMPREF1078_RS09835 0.55 -2.2 565,264 + HMPREF1078_RS09835 0.55 -0.3 565,265 - HMPREF1078_RS09835 0.55 -0.9 565,274 - HMPREF1078_RS09835 0.56 -0.9 565,278 + HMPREF1078_RS09835 0.57 -1.7 565,278 + HMPREF1078_RS09835 0.57 -1.7 565,279 - HMPREF1078_RS09835 0.57 -0.9 565,287 + HMPREF1078_RS09835 0.58 -0.6 565,288 - HMPREF1078_RS09835 0.58 -0.9 565,288 - HMPREF1078_RS09835 0.58 -2.1 565,343 + HMPREF1078_RS09835 0.66 -3.6 565,343 + HMPREF1078_RS09835 0.66 -1.1 565,343 + HMPREF1078_RS09835 0.66 +0.3 565,356 + HMPREF1078_RS09835 0.68 -1.3 565,358 + HMPREF1078_RS09835 0.68 -1.1 565,408 - HMPREF1078_RS09835 0.75 -2.1 565,447 + HMPREF1078_RS09835 0.80 -0.6 565,448 - HMPREF1078_RS09835 0.80 -1.7 565,521 + +0.3 565,521 + -1.3 565,522 - -4.1 565,522 - -1.2 565,529 - -1.4 565,539 + -0.1 565,539 + -0.9 565,540 - -2.2 565,606 + -2.1 565,606 + -0.7 565,606 + -1.1 565,606 + -0.1 565,607 - +2.4 565,607 - -1.8 565,613 + -0.6
Or see this region's nucleotide sequence