Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03525 and HMPREF1078_RS19500 are separated by 7 nucleotides HMPREF1078_RS19500 and HMPREF1078_RS19295 overlap by 38 nucleotides HMPREF1078_RS19295 and HMPREF1078_RS03540 are separated by 38 nucleotides HMPREF1078_RS03540 and HMPREF1078_RS18385 overlap by 64 nucleotides HMPREF1078_RS18385 and HMPREF1078_RS03550 are separated by 126 nucleotides
HMPREF1078_RS03525: HMPREF1078_RS03525 - antibiotic biosynthesis monooxygenase, at 830,096 to 830,590
_RS03525
HMPREF1078_RS19500: HMPREF1078_RS19500 - hypothetical protein, at 830,598 to 831,154
_RS19500
HMPREF1078_RS19295: HMPREF1078_RS19295 - hypothetical protein, at 831,117 to 831,266
_RS19295
HMPREF1078_RS03540: HMPREF1078_RS03540 - DUF3737 family protein, at 831,305 to 832,204
_RS03540
HMPREF1078_RS18385: HMPREF1078_RS18385 - MATE family efflux transporter, at 832,141 to 832,388
_RS18385
HMPREF1078_RS03550: HMPREF1078_RS03550 - MalY/PatB family protein, at 832,515 to 833,681
_RS03550
Position (kb) 831
832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 830.324 kb on + strand, within HMPREF1078_RS03525 at 830.324 kb on + strand, within HMPREF1078_RS03525 at 830.325 kb on - strand, within HMPREF1078_RS03525 at 830.329 kb on - strand, within HMPREF1078_RS03525 at 830.333 kb on + strand, within HMPREF1078_RS03525 at 830.391 kb on - strand, within HMPREF1078_RS03525 at 830.391 kb on - strand, within HMPREF1078_RS03525 at 830.530 kb on - strand, within HMPREF1078_RS03525 at 830.533 kb on - strand, within HMPREF1078_RS03525 at 830.584 kb on - strand at 830.588 kb on + strand at 830.597 kb on + strand at 830.597 kb on + strand at 830.598 kb on - strand at 830.668 kb on + strand, within HMPREF1078_RS19500 at 830.792 kb on - strand, within HMPREF1078_RS19500 at 830.794 kb on + strand, within HMPREF1078_RS19500 at 830.802 kb on - strand, within HMPREF1078_RS19500 at 830.802 kb on - strand, within HMPREF1078_RS19500 at 830.802 kb on - strand, within HMPREF1078_RS19500 at 830.844 kb on + strand, within HMPREF1078_RS19500 at 830.867 kb on - strand, within HMPREF1078_RS19500 at 830.869 kb on + strand, within HMPREF1078_RS19500 at 830.914 kb on + strand, within HMPREF1078_RS19500 at 831.116 kb on + strand at 831.304 kb on + strand at 831.304 kb on + strand at 831.305 kb on - strand at 831.312 kb on + strand at 831.312 kb on + strand at 831.316 kb on - strand at 831.458 kb on + strand, within HMPREF1078_RS03540 at 831.510 kb on + strand, within HMPREF1078_RS03540 at 831.533 kb on + strand, within HMPREF1078_RS03540 at 831.559 kb on + strand, within HMPREF1078_RS03540 at 831.560 kb on - strand, within HMPREF1078_RS03540 at 831.560 kb on - strand, within HMPREF1078_RS03540 at 831.560 kb on - strand, within HMPREF1078_RS03540 at 831.619 kb on - strand, within HMPREF1078_RS03540 at 831.619 kb on - strand, within HMPREF1078_RS03540 at 831.706 kb on + strand, within HMPREF1078_RS03540 at 831.727 kb on + strand, within HMPREF1078_RS03540 at 831.728 kb on - strand, within HMPREF1078_RS03540 at 831.729 kb on + strand, within HMPREF1078_RS03540 at 831.729 kb on + strand, within HMPREF1078_RS03540 at 831.730 kb on - strand, within HMPREF1078_RS03540 at 831.845 kb on + strand, within HMPREF1078_RS03540 at 831.905 kb on + strand, within HMPREF1078_RS03540 at 831.938 kb on + strand, within HMPREF1078_RS03540 at 832.002 kb on - strand, within HMPREF1078_RS03540 at 832.169 kb on - strand at 832.200 kb on + strand at 832.316 kb on + strand, within HMPREF1078_RS18385 at 832.350 kb on - strand, within HMPREF1078_RS18385 at 832.361 kb on + strand, within HMPREF1078_RS18385 at 832.362 kb on - strand, within HMPREF1078_RS18385 at 832.396 kb on - strand at 832.419 kb on - strand at 832.420 kb on + strand at 832.420 kb on + strand at 832.478 kb on + strand at 832.521 kb on + strand at 832.594 kb on + strand at 832.595 kb on - strand at 832.601 kb on + strand at 832.601 kb on + strand at 832.601 kb on + strand at 832.602 kb on - strand at 832.602 kb on - strand at 832.621 kb on - strand at 832.640 kb on + strand, within HMPREF1078_RS03550 at 832.708 kb on - strand, within HMPREF1078_RS03550 at 832.756 kb on + strand, within HMPREF1078_RS03550 at 832.756 kb on + strand, within HMPREF1078_RS03550 at 832.757 kb on - strand, within HMPREF1078_RS03550 at 832.757 kb on - strand, within HMPREF1078_RS03550 at 832.864 kb on - strand, within HMPREF1078_RS03550
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 830,324 + HMPREF1078_RS03525 0.46 -2.5 830,324 + HMPREF1078_RS03525 0.46 +2.7 830,325 - HMPREF1078_RS03525 0.46 +2.2 830,329 - HMPREF1078_RS03525 0.47 -0.0 830,333 + HMPREF1078_RS03525 0.48 +0.6 830,391 - HMPREF1078_RS03525 0.60 -2.9 830,391 - HMPREF1078_RS03525 0.60 +2.1 830,530 - HMPREF1078_RS03525 0.88 -1.6 830,533 - HMPREF1078_RS03525 0.88 -0.3 830,584 - +0.9 830,588 + -1.0 830,597 + -0.9 830,597 + +0.4 830,598 - -0.0 830,668 + HMPREF1078_RS19500 0.13 -0.3 830,792 - HMPREF1078_RS19500 0.35 +3.6 830,794 + HMPREF1078_RS19500 0.35 +1.0 830,802 - HMPREF1078_RS19500 0.37 -0.4 830,802 - HMPREF1078_RS19500 0.37 +1.7 830,802 - HMPREF1078_RS19500 0.37 +1.0 830,844 + HMPREF1078_RS19500 0.44 -1.5 830,867 - HMPREF1078_RS19500 0.48 -1.5 830,869 + HMPREF1078_RS19500 0.49 -3.7 830,914 + HMPREF1078_RS19500 0.57 -1.4 831,116 + -1.0 831,304 + +1.3 831,304 + +1.8 831,305 - -1.5 831,312 + +2.9 831,312 + +0.4 831,316 - +0.1 831,458 + HMPREF1078_RS03540 0.17 +1.1 831,510 + HMPREF1078_RS03540 0.23 +1.6 831,533 + HMPREF1078_RS03540 0.25 +2.8 831,559 + HMPREF1078_RS03540 0.28 -1.7 831,560 - HMPREF1078_RS03540 0.28 -0.1 831,560 - HMPREF1078_RS03540 0.28 +2.7 831,560 - HMPREF1078_RS03540 0.28 +1.7 831,619 - HMPREF1078_RS03540 0.35 +1.1 831,619 - HMPREF1078_RS03540 0.35 +2.0 831,706 + HMPREF1078_RS03540 0.45 +1.0 831,727 + HMPREF1078_RS03540 0.47 -2.6 831,728 - HMPREF1078_RS03540 0.47 -0.5 831,729 + HMPREF1078_RS03540 0.47 -1.4 831,729 + HMPREF1078_RS03540 0.47 +1.1 831,730 - HMPREF1078_RS03540 0.47 -0.9 831,845 + HMPREF1078_RS03540 0.60 +0.3 831,905 + HMPREF1078_RS03540 0.67 -0.7 831,938 + HMPREF1078_RS03540 0.70 -0.3 832,002 - HMPREF1078_RS03540 0.77 +1.7 832,169 - +0.0 832,200 + -0.0 832,316 + HMPREF1078_RS18385 0.71 +0.8 832,350 - HMPREF1078_RS18385 0.84 -1.4 832,361 + HMPREF1078_RS18385 0.89 -0.4 832,362 - HMPREF1078_RS18385 0.89 +0.3 832,396 - -1.0 832,419 - -0.1 832,420 + +1.0 832,420 + -2.3 832,478 + -0.5 832,521 + +0.5 832,594 + -0.0 832,595 - -1.1 832,601 + +3.2 832,601 + -1.4 832,601 + -0.5 832,602 - -0.6 832,602 - -0.9 832,621 - -1.4 832,640 + HMPREF1078_RS03550 0.11 -0.8 832,708 - HMPREF1078_RS03550 0.17 -2.2 832,756 + HMPREF1078_RS03550 0.21 +0.4 832,756 + HMPREF1078_RS03550 0.21 -1.5 832,757 - HMPREF1078_RS03550 0.21 -1.0 832,757 - HMPREF1078_RS03550 0.21 +0.3 832,864 - HMPREF1078_RS03550 0.30 +1.8
Or see this region's nucleotide sequence