Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01975 and HMPREF1078_RS01980 are separated by 10 nucleotides HMPREF1078_RS01980 and HMPREF1078_RS01985 are separated by 5 nucleotides
HMPREF1078_RS01975: HMPREF1078_RS01975 - DNA polymerase III subunit beta, at 488,249 to 489,373
_RS01975
HMPREF1078_RS01980: HMPREF1078_RS01980 - 3'-5' exonuclease, at 489,384 to 490,154
_RS01980
HMPREF1078_RS01985: HMPREF1078_RS01985 - iron-containing alcohol dehydrogenase, at 490,160 to 491,311
_RS01985
Position (kb) 489
490
491 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 489.391 kb on + strand at 489.391 kb on + strand at 489.440 kb on + strand at 489.440 kb on + strand at 489.443 kb on + strand at 489.586 kb on + strand, within HMPREF1078_RS01980 at 489.599 kb on + strand, within HMPREF1078_RS01980 at 489.637 kb on + strand, within HMPREF1078_RS01980 at 489.662 kb on + strand, within HMPREF1078_RS01980 at 489.663 kb on - strand, within HMPREF1078_RS01980 at 489.754 kb on + strand, within HMPREF1078_RS01980 at 489.803 kb on + strand, within HMPREF1078_RS01980 at 489.810 kb on + strand, within HMPREF1078_RS01980 at 489.810 kb on + strand, within HMPREF1078_RS01980 at 489.868 kb on - strand, within HMPREF1078_RS01980 at 489.953 kb on + strand, within HMPREF1078_RS01980 at 489.974 kb on + strand, within HMPREF1078_RS01980 at 489.974 kb on + strand, within HMPREF1078_RS01980 at 489.974 kb on + strand, within HMPREF1078_RS01980 at 489.974 kb on + strand, within HMPREF1078_RS01980 at 489.974 kb on + strand, within HMPREF1078_RS01980 at 489.974 kb on + strand, within HMPREF1078_RS01980 at 489.979 kb on + strand, within HMPREF1078_RS01980 at 489.979 kb on + strand, within HMPREF1078_RS01980 at 489.979 kb on + strand, within HMPREF1078_RS01980 at 489.981 kb on + strand, within HMPREF1078_RS01980 at 489.981 kb on + strand, within HMPREF1078_RS01980 at 489.983 kb on + strand, within HMPREF1078_RS01980 at 490.006 kb on + strand, within HMPREF1078_RS01980 at 490.020 kb on + strand, within HMPREF1078_RS01980 at 490.022 kb on + strand, within HMPREF1078_RS01980 at 490.022 kb on + strand, within HMPREF1078_RS01980 at 490.036 kb on + strand, within HMPREF1078_RS01980 at 490.068 kb on + strand, within HMPREF1078_RS01980 at 490.166 kb on - strand at 490.249 kb on + strand at 490.265 kb on + strand at 490.265 kb on + strand at 490.265 kb on + strand at 490.298 kb on + strand, within HMPREF1078_RS01985 at 490.530 kb on + strand, within HMPREF1078_RS01985 at 490.557 kb on + strand, within HMPREF1078_RS01985 at 490.557 kb on + strand, within HMPREF1078_RS01985 at 490.561 kb on + strand, within HMPREF1078_RS01985 at 490.561 kb on + strand, within HMPREF1078_RS01985 at 490.691 kb on + strand, within HMPREF1078_RS01985 at 490.691 kb on + strand, within HMPREF1078_RS01985 at 490.693 kb on + strand, within HMPREF1078_RS01985 at 490.738 kb on + strand, within HMPREF1078_RS01985 at 490.746 kb on + strand, within HMPREF1078_RS01985 at 490.747 kb on - strand, within HMPREF1078_RS01985 at 490.757 kb on + strand, within HMPREF1078_RS01985 at 490.757 kb on + strand, within HMPREF1078_RS01985 at 490.757 kb on + strand, within HMPREF1078_RS01985 at 490.838 kb on + strand, within HMPREF1078_RS01985 at 491.033 kb on + strand, within HMPREF1078_RS01985 at 491.033 kb on + strand, within HMPREF1078_RS01985 at 491.033 kb on + strand, within HMPREF1078_RS01985 at 491.033 kb on + strand, within HMPREF1078_RS01985 at 491.033 kb on + strand, within HMPREF1078_RS01985 at 491.034 kb on - strand, within HMPREF1078_RS01985 at 491.035 kb on + strand, within HMPREF1078_RS01985 at 491.035 kb on + strand, within HMPREF1078_RS01985 at 491.036 kb on - strand, within HMPREF1078_RS01985 at 491.068 kb on + strand, within HMPREF1078_RS01985 at 491.092 kb on + strand, within HMPREF1078_RS01985 at 491.092 kb on + strand, within HMPREF1078_RS01985
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 489,391 + -1.5 489,391 + -4.6 489,440 + -2.2 489,440 + -0.2 489,443 + +1.3 489,586 + HMPREF1078_RS01980 0.26 -0.7 489,599 + HMPREF1078_RS01980 0.28 -0.5 489,637 + HMPREF1078_RS01980 0.33 -2.2 489,662 + HMPREF1078_RS01980 0.36 +2.0 489,663 - HMPREF1078_RS01980 0.36 +0.3 489,754 + HMPREF1078_RS01980 0.48 +0.3 489,803 + HMPREF1078_RS01980 0.54 +1.0 489,810 + HMPREF1078_RS01980 0.55 -1.0 489,810 + HMPREF1078_RS01980 0.55 -0.7 489,868 - HMPREF1078_RS01980 0.63 -1.1 489,953 + HMPREF1078_RS01980 0.74 -1.9 489,974 + HMPREF1078_RS01980 0.77 -2.1 489,974 + HMPREF1078_RS01980 0.77 -1.2 489,974 + HMPREF1078_RS01980 0.77 -3.9 489,974 + HMPREF1078_RS01980 0.77 -1.3 489,974 + HMPREF1078_RS01980 0.77 -0.2 489,974 + HMPREF1078_RS01980 0.77 -2.1 489,979 + HMPREF1078_RS01980 0.77 -1.2 489,979 + HMPREF1078_RS01980 0.77 -1.3 489,979 + HMPREF1078_RS01980 0.77 -1.5 489,981 + HMPREF1078_RS01980 0.77 +0.1 489,981 + HMPREF1078_RS01980 0.77 +0.6 489,983 + HMPREF1078_RS01980 0.78 +1.3 490,006 + HMPREF1078_RS01980 0.81 -0.2 490,020 + HMPREF1078_RS01980 0.82 -0.7 490,022 + HMPREF1078_RS01980 0.83 -0.3 490,022 + HMPREF1078_RS01980 0.83 -0.7 490,036 + HMPREF1078_RS01980 0.85 -3.8 490,068 + HMPREF1078_RS01980 0.89 -2.3 490,166 - +0.0 490,249 + -3.4 490,265 + -0.8 490,265 + -0.9 490,265 + -0.1 490,298 + HMPREF1078_RS01985 0.12 -1.0 490,530 + HMPREF1078_RS01985 0.32 -1.1 490,557 + HMPREF1078_RS01985 0.34 +3.3 490,557 + HMPREF1078_RS01985 0.34 -0.5 490,561 + HMPREF1078_RS01985 0.35 +1.0 490,561 + HMPREF1078_RS01985 0.35 -1.4 490,691 + HMPREF1078_RS01985 0.46 +0.0 490,691 + HMPREF1078_RS01985 0.46 +1.1 490,693 + HMPREF1078_RS01985 0.46 +1.0 490,738 + HMPREF1078_RS01985 0.50 -0.5 490,746 + HMPREF1078_RS01985 0.51 +0.6 490,747 - HMPREF1078_RS01985 0.51 -0.7 490,757 + HMPREF1078_RS01985 0.52 +0.5 490,757 + HMPREF1078_RS01985 0.52 -3.8 490,757 + HMPREF1078_RS01985 0.52 +0.2 490,838 + HMPREF1078_RS01985 0.59 +1.3 491,033 + HMPREF1078_RS01985 0.76 +0.3 491,033 + HMPREF1078_RS01985 0.76 +3.6 491,033 + HMPREF1078_RS01985 0.76 -0.2 491,033 + HMPREF1078_RS01985 0.76 +0.3 491,033 + HMPREF1078_RS01985 0.76 +0.6 491,034 - HMPREF1078_RS01985 0.76 -1.6 491,035 + HMPREF1078_RS01985 0.76 +0.3 491,035 + HMPREF1078_RS01985 0.76 +0.3 491,036 - HMPREF1078_RS01985 0.76 -0.2 491,068 + HMPREF1078_RS01985 0.79 -1.1 491,092 + HMPREF1078_RS01985 0.81 -2.8 491,092 + HMPREF1078_RS01985 0.81 +1.4
Or see this region's nucleotide sequence