Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01635 and HMPREF1078_RS01640 are separated by 51 nucleotides HMPREF1078_RS01640 and HMPREF1078_RS01645 are separated by 13 nucleotides
HMPREF1078_RS01635: HMPREF1078_RS01635 - TonB-dependent receptor, at 412,340 to 413,578
_RS01635
HMPREF1078_RS01640: HMPREF1078_RS01640 - polysaccharide biosynthesis/export family protein, at 413,630 to 414,397
_RS01640
HMPREF1078_RS01645: HMPREF1078_RS01645 - tyrosine-protein kinase, at 414,411 to 416,786
_RS01645
Position (kb) 413
414
415 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 412.634 kb on + strand, within HMPREF1078_RS01635 at 412.635 kb on - strand, within HMPREF1078_RS01635 at 412.760 kb on + strand, within HMPREF1078_RS01635 at 412.761 kb on + strand, within HMPREF1078_RS01635 at 412.761 kb on + strand, within HMPREF1078_RS01635 at 412.762 kb on - strand, within HMPREF1078_RS01635 at 412.762 kb on - strand, within HMPREF1078_RS01635 at 412.764 kb on - strand, within HMPREF1078_RS01635 at 412.774 kb on + strand, within HMPREF1078_RS01635 at 412.774 kb on + strand, within HMPREF1078_RS01635 at 412.844 kb on + strand, within HMPREF1078_RS01635 at 412.844 kb on + strand, within HMPREF1078_RS01635 at 413.057 kb on + strand, within HMPREF1078_RS01635 at 413.057 kb on + strand, within HMPREF1078_RS01635 at 413.058 kb on - strand, within HMPREF1078_RS01635 at 413.106 kb on - strand, within HMPREF1078_RS01635 at 413.106 kb on - strand, within HMPREF1078_RS01635 at 413.230 kb on - strand, within HMPREF1078_RS01635 at 413.501 kb on + strand at 413.501 kb on + strand at 413.502 kb on - strand at 413.502 kb on - strand at 413.511 kb on + strand at 413.576 kb on + strand at 413.583 kb on + strand at 413.597 kb on - strand at 413.627 kb on + strand at 413.629 kb on + strand at 413.630 kb on - strand at 413.630 kb on - strand at 413.649 kb on + strand at 413.656 kb on + strand at 413.657 kb on - strand at 413.688 kb on - strand at 413.688 kb on - strand at 413.744 kb on + strand, within HMPREF1078_RS01640 at 413.744 kb on + strand, within HMPREF1078_RS01640 at 413.744 kb on + strand, within HMPREF1078_RS01640 at 413.744 kb on + strand, within HMPREF1078_RS01640 at 413.744 kb on + strand, within HMPREF1078_RS01640 at 413.744 kb on + strand, within HMPREF1078_RS01640 at 413.744 kb on + strand, within HMPREF1078_RS01640 at 413.745 kb on - strand, within HMPREF1078_RS01640 at 413.745 kb on - strand, within HMPREF1078_RS01640 at 413.745 kb on - strand, within HMPREF1078_RS01640 at 413.745 kb on - strand, within HMPREF1078_RS01640 at 413.745 kb on - strand, within HMPREF1078_RS01640 at 413.745 kb on - strand, within HMPREF1078_RS01640 at 413.815 kb on + strand, within HMPREF1078_RS01640 at 413.815 kb on + strand, within HMPREF1078_RS01640 at 413.831 kb on + strand, within HMPREF1078_RS01640 at 414.094 kb on + strand, within HMPREF1078_RS01640 at 414.140 kb on + strand, within HMPREF1078_RS01640 at 414.224 kb on - strand, within HMPREF1078_RS01640 at 414.241 kb on + strand, within HMPREF1078_RS01640 at 414.269 kb on + strand, within HMPREF1078_RS01640 at 414.270 kb on - strand, within HMPREF1078_RS01640 at 414.410 kb on + strand at 414.410 kb on + strand at 414.410 kb on + strand at 414.411 kb on - strand at 414.523 kb on + strand at 414.523 kb on + strand at 414.524 kb on - strand at 414.568 kb on + strand at 414.569 kb on - strand at 414.570 kb on + strand at 414.570 kb on + strand at 414.570 kb on + strand at 414.570 kb on + strand at 414.571 kb on - strand at 414.571 kb on - strand at 414.590 kb on - strand at 414.754 kb on - strand, within HMPREF1078_RS01645 at 414.789 kb on + strand, within HMPREF1078_RS01645 at 414.789 kb on + strand, within HMPREF1078_RS01645 at 414.884 kb on - strand, within HMPREF1078_RS01645 at 414.884 kb on - strand, within HMPREF1078_RS01645 at 414.999 kb on + strand, within HMPREF1078_RS01645 at 415.091 kb on + strand, within HMPREF1078_RS01645 at 415.309 kb on - strand, within HMPREF1078_RS01645 at 415.335 kb on - strand, within HMPREF1078_RS01645 at 415.356 kb on + strand, within HMPREF1078_RS01645
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 412,634 + HMPREF1078_RS01635 0.24 -2.3 412,635 - HMPREF1078_RS01635 0.24 +0.6 412,760 + HMPREF1078_RS01635 0.34 +0.5 412,761 + HMPREF1078_RS01635 0.34 +0.3 412,761 + HMPREF1078_RS01635 0.34 -3.9 412,762 - HMPREF1078_RS01635 0.34 -2.6 412,762 - HMPREF1078_RS01635 0.34 +2.1 412,764 - HMPREF1078_RS01635 0.34 -0.1 412,774 + HMPREF1078_RS01635 0.35 -1.5 412,774 + HMPREF1078_RS01635 0.35 +0.7 412,844 + HMPREF1078_RS01635 0.41 -1.1 412,844 + HMPREF1078_RS01635 0.41 +0.5 413,057 + HMPREF1078_RS01635 0.58 -0.4 413,057 + HMPREF1078_RS01635 0.58 -1.6 413,058 - HMPREF1078_RS01635 0.58 +0.0 413,106 - HMPREF1078_RS01635 0.62 -0.8 413,106 - HMPREF1078_RS01635 0.62 -2.0 413,230 - HMPREF1078_RS01635 0.72 +1.3 413,501 + -1.8 413,501 + +0.5 413,502 - -0.7 413,502 - +0.0 413,511 + +0.3 413,576 + -2.1 413,583 + -0.5 413,597 - +0.0 413,627 + -2.3 413,629 + -1.3 413,630 - -2.8 413,630 - -0.9 413,649 + +0.7 413,656 + +0.9 413,657 - -2.4 413,688 - -1.4 413,688 - +0.0 413,744 + HMPREF1078_RS01640 0.15 +0.3 413,744 + HMPREF1078_RS01640 0.15 -0.5 413,744 + HMPREF1078_RS01640 0.15 -0.7 413,744 + HMPREF1078_RS01640 0.15 +0.0 413,744 + HMPREF1078_RS01640 0.15 -3.8 413,744 + HMPREF1078_RS01640 0.15 -3.2 413,744 + HMPREF1078_RS01640 0.15 -0.5 413,745 - HMPREF1078_RS01640 0.15 -1.3 413,745 - HMPREF1078_RS01640 0.15 -1.8 413,745 - HMPREF1078_RS01640 0.15 +1.9 413,745 - HMPREF1078_RS01640 0.15 -3.8 413,745 - HMPREF1078_RS01640 0.15 -0.3 413,745 - HMPREF1078_RS01640 0.15 -0.6 413,815 + HMPREF1078_RS01640 0.24 -0.1 413,815 + HMPREF1078_RS01640 0.24 -1.3 413,831 + HMPREF1078_RS01640 0.26 +1.9 414,094 + HMPREF1078_RS01640 0.60 +0.3 414,140 + HMPREF1078_RS01640 0.66 -2.6 414,224 - HMPREF1078_RS01640 0.77 -2.3 414,241 + HMPREF1078_RS01640 0.80 -0.2 414,269 + HMPREF1078_RS01640 0.83 +0.6 414,270 - HMPREF1078_RS01640 0.83 +0.1 414,410 + -3.3 414,410 + +3.6 414,410 + -1.5 414,411 - -1.4 414,523 + -1.2 414,523 + +4.1 414,524 - -2.1 414,568 + -2.0 414,569 - +0.0 414,570 + +4.8 414,570 + -1.3 414,570 + -3.5 414,570 + +0.7 414,571 - -1.1 414,571 - +0.6 414,590 - +2.5 414,754 - HMPREF1078_RS01645 0.14 +1.6 414,789 + HMPREF1078_RS01645 0.16 -1.6 414,789 + HMPREF1078_RS01645 0.16 -0.3 414,884 - HMPREF1078_RS01645 0.20 +0.2 414,884 - HMPREF1078_RS01645 0.20 -1.8 414,999 + HMPREF1078_RS01645 0.25 +0.1 415,091 + HMPREF1078_RS01645 0.29 -0.1 415,309 - HMPREF1078_RS01645 0.38 -0.1 415,335 - HMPREF1078_RS01645 0.39 +2.0 415,356 + HMPREF1078_RS01645 0.40 -1.7
Or see this region's nucleotide sequence