Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01160 and HMPREF1078_RS01165 are separated by 62 nucleotides HMPREF1078_RS01165 and HMPREF1078_RS01170 are separated by 38 nucleotides HMPREF1078_RS01170 and HMPREF1078_RS01175 overlap by 4 nucleotides
HMPREF1078_RS01160: HMPREF1078_RS01160 - DUF6493 family protein, at 289,853 to 291,409
_RS01160
HMPREF1078_RS01165: HMPREF1078_RS01165 - agmatine deiminase family protein, at 291,472 to 292,509
_RS01165
HMPREF1078_RS01170: HMPREF1078_RS01170 - carbon-nitrogen hydrolase, at 292,548 to 293,423
_RS01170
HMPREF1078_RS01175: HMPREF1078_RS01175 - aminodeoxychorismate synthase component I, at 293,420 to 294,421
_RS01175
Position (kb) 291
292
293 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 290.642 kb on - strand, within HMPREF1078_RS01160 at 290.675 kb on - strand, within HMPREF1078_RS01160 at 290.742 kb on + strand, within HMPREF1078_RS01160 at 290.744 kb on + strand, within HMPREF1078_RS01160 at 290.745 kb on - strand, within HMPREF1078_RS01160 at 290.745 kb on - strand, within HMPREF1078_RS01160 at 290.745 kb on - strand, within HMPREF1078_RS01160 at 290.747 kb on - strand, within HMPREF1078_RS01160 at 290.747 kb on - strand, within HMPREF1078_RS01160 at 290.747 kb on - strand, within HMPREF1078_RS01160 at 290.893 kb on - strand, within HMPREF1078_RS01160 at 290.999 kb on + strand, within HMPREF1078_RS01160 at 291.000 kb on - strand, within HMPREF1078_RS01160 at 291.087 kb on + strand, within HMPREF1078_RS01160 at 291.313 kb on + strand at 291.314 kb on - strand at 291.332 kb on + strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.333 kb on - strand at 291.424 kb on - strand at 291.429 kb on + strand at 291.431 kb on + strand at 291.432 kb on - strand at 291.455 kb on + strand at 291.464 kb on - strand at 291.492 kb on - strand at 291.564 kb on - strand at 291.566 kb on + strand at 291.567 kb on - strand at 291.590 kb on + strand, within HMPREF1078_RS01165 at 291.720 kb on + strand, within HMPREF1078_RS01165 at 291.721 kb on - strand, within HMPREF1078_RS01165 at 291.721 kb on - strand, within HMPREF1078_RS01165 at 291.721 kb on - strand, within HMPREF1078_RS01165 at 291.747 kb on + strand, within HMPREF1078_RS01165 at 291.748 kb on - strand, within HMPREF1078_RS01165 at 291.753 kb on - strand, within HMPREF1078_RS01165 at 291.779 kb on - strand, within HMPREF1078_RS01165 at 291.891 kb on + strand, within HMPREF1078_RS01165 at 291.891 kb on + strand, within HMPREF1078_RS01165 at 291.892 kb on - strand, within HMPREF1078_RS01165 at 291.892 kb on - strand, within HMPREF1078_RS01165 at 291.963 kb on - strand, within HMPREF1078_RS01165 at 292.019 kb on - strand, within HMPREF1078_RS01165 at 292.070 kb on - strand, within HMPREF1078_RS01165 at 292.131 kb on + strand, within HMPREF1078_RS01165 at 292.132 kb on - strand, within HMPREF1078_RS01165 at 292.132 kb on - strand, within HMPREF1078_RS01165 at 292.141 kb on + strand, within HMPREF1078_RS01165 at 292.206 kb on - strand, within HMPREF1078_RS01165 at 292.348 kb on + strand, within HMPREF1078_RS01165 at 292.350 kb on + strand, within HMPREF1078_RS01165 at 292.351 kb on - strand, within HMPREF1078_RS01165 at 292.413 kb on + strand at 292.415 kb on + strand at 292.416 kb on - strand at 292.529 kb on - strand at 292.555 kb on + strand at 292.577 kb on + strand at 292.599 kb on - strand at 292.619 kb on + strand at 292.832 kb on + strand, within HMPREF1078_RS01170 at 292.832 kb on + strand, within HMPREF1078_RS01170 at 292.892 kb on + strand, within HMPREF1078_RS01170 at 292.914 kb on + strand, within HMPREF1078_RS01170 at 292.915 kb on - strand, within HMPREF1078_RS01170 at 292.987 kb on + strand, within HMPREF1078_RS01170 at 292.987 kb on + strand, within HMPREF1078_RS01170 at 293.119 kb on + strand, within HMPREF1078_RS01170 at 293.120 kb on - strand, within HMPREF1078_RS01170 at 293.182 kb on + strand, within HMPREF1078_RS01170 at 293.294 kb on + strand, within HMPREF1078_RS01170 at 293.309 kb on - strand, within HMPREF1078_RS01170 at 293.360 kb on + strand at 293.420 kb on - strand at 293.429 kb on + strand at 293.440 kb on - strand at 293.440 kb on - strand at 293.456 kb on - strand at 293.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 remove 290,642 - HMPREF1078_RS01160 0.51 +0.3 290,675 - HMPREF1078_RS01160 0.53 -0.2 290,742 + HMPREF1078_RS01160 0.57 -2.8 290,744 + HMPREF1078_RS01160 0.57 -1.0 290,745 - HMPREF1078_RS01160 0.57 -0.7 290,745 - HMPREF1078_RS01160 0.57 +1.6 290,745 - HMPREF1078_RS01160 0.57 +0.7 290,747 - HMPREF1078_RS01160 0.57 +1.3 290,747 - HMPREF1078_RS01160 0.57 -0.0 290,747 - HMPREF1078_RS01160 0.57 +0.2 290,893 - HMPREF1078_RS01160 0.67 +2.2 290,999 + HMPREF1078_RS01160 0.74 -1.6 291,000 - HMPREF1078_RS01160 0.74 -0.6 291,087 + HMPREF1078_RS01160 0.79 -1.4 291,313 + +0.3 291,314 - -0.4 291,332 + +0.8 291,333 - -2.4 291,333 - -1.1 291,333 - +2.0 291,333 - -0.3 291,333 - -4.2 291,424 - -1.3 291,429 + -1.6 291,431 + -0.3 291,432 - -0.7 291,455 + +2.5 291,464 - -1.4 291,492 - -4.6 291,564 - -2.4 291,566 + -2.9 291,567 - -2.3 291,590 + HMPREF1078_RS01165 0.11 -1.4 291,720 + HMPREF1078_RS01165 0.24 -0.3 291,721 - HMPREF1078_RS01165 0.24 -1.2 291,721 - HMPREF1078_RS01165 0.24 -2.0 291,721 - HMPREF1078_RS01165 0.24 -1.9 291,747 + HMPREF1078_RS01165 0.26 -2.5 291,748 - HMPREF1078_RS01165 0.27 -1.8 291,753 - HMPREF1078_RS01165 0.27 -0.5 291,779 - HMPREF1078_RS01165 0.30 -2.0 291,891 + HMPREF1078_RS01165 0.40 -1.7 291,891 + HMPREF1078_RS01165 0.40 -2.5 291,892 - HMPREF1078_RS01165 0.40 -3.0 291,892 - HMPREF1078_RS01165 0.40 -3.6 291,963 - HMPREF1078_RS01165 0.47 +0.3 292,019 - HMPREF1078_RS01165 0.53 -0.7 292,070 - HMPREF1078_RS01165 0.58 -2.5 292,131 + HMPREF1078_RS01165 0.63 +0.5 292,132 - HMPREF1078_RS01165 0.64 -2.2 292,132 - HMPREF1078_RS01165 0.64 -1.2 292,141 + HMPREF1078_RS01165 0.64 -2.2 292,206 - HMPREF1078_RS01165 0.71 -3.0 292,348 + HMPREF1078_RS01165 0.84 -3.3 292,350 + HMPREF1078_RS01165 0.85 -2.9 292,351 - HMPREF1078_RS01165 0.85 -3.1 292,413 + -1.4 292,415 + -2.2 292,416 - -2.2 292,529 - -0.5 292,555 + -0.7 292,577 + -0.3 292,599 - +1.3 292,619 + -0.5 292,832 + HMPREF1078_RS01170 0.32 +0.7 292,832 + HMPREF1078_RS01170 0.32 -2.0 292,892 + HMPREF1078_RS01170 0.39 +0.3 292,914 + HMPREF1078_RS01170 0.42 +0.7 292,915 - HMPREF1078_RS01170 0.42 +0.3 292,987 + HMPREF1078_RS01170 0.50 -1.3 292,987 + HMPREF1078_RS01170 0.50 -1.9 293,119 + HMPREF1078_RS01170 0.65 -1.2 293,120 - HMPREF1078_RS01170 0.65 +1.3 293,182 + HMPREF1078_RS01170 0.72 -2.4 293,294 + HMPREF1078_RS01170 0.85 -2.5 293,309 - HMPREF1078_RS01170 0.87 -0.0 293,360 + -0.5 293,420 - -1.7 293,429 + -0.4 293,440 - -0.9 293,440 - -0.1 293,456 - +2.1 293,505 - -0.3
Or see this region's nucleotide sequence