Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20130 and ECOLIN_RS20135 are separated by 50 nucleotides ECOLIN_RS20135 and ECOLIN_RS20140 are separated by 519 nucleotides
ECOLIN_RS20130: ECOLIN_RS20130 - alpha,alpha-trehalase, at 4,041,670 to 4,043,319
_RS20130
ECOLIN_RS20135: ECOLIN_RS20135 - response regulator transcription factor, at 4,043,370 to 4,043,972
_RS20135
ECOLIN_RS20140: ECOLIN_RS20140 - LysR family transcriptional regulator, at 4,044,492 to 4,045,391
_RS20140
Position (kb) 4043
4044 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4042.426 kb on + strand, within ECOLIN_RS20130 at 4042.426 kb on + strand, within ECOLIN_RS20130 at 4042.936 kb on + strand, within ECOLIN_RS20130 at 4042.937 kb on - strand, within ECOLIN_RS20130 at 4043.100 kb on + strand, within ECOLIN_RS20130 at 4043.170 kb on + strand at 4043.171 kb on - strand at 4043.171 kb on - strand at 4043.317 kb on + strand at 4043.318 kb on - strand at 4043.382 kb on - strand at 4043.385 kb on + strand at 4043.472 kb on - strand, within ECOLIN_RS20135 at 4043.495 kb on + strand, within ECOLIN_RS20135 at 4043.496 kb on - strand, within ECOLIN_RS20135 at 4043.524 kb on - strand, within ECOLIN_RS20135 at 4043.564 kb on + strand, within ECOLIN_RS20135 at 4043.565 kb on - strand, within ECOLIN_RS20135 at 4043.628 kb on - strand, within ECOLIN_RS20135 at 4043.628 kb on - strand, within ECOLIN_RS20135 at 4043.628 kb on - strand, within ECOLIN_RS20135 at 4043.628 kb on - strand, within ECOLIN_RS20135 at 4043.628 kb on - strand, within ECOLIN_RS20135 at 4043.688 kb on - strand, within ECOLIN_RS20135 at 4043.697 kb on - strand, within ECOLIN_RS20135 at 4043.697 kb on - strand, within ECOLIN_RS20135 at 4043.735 kb on + strand, within ECOLIN_RS20135 at 4043.903 kb on + strand, within ECOLIN_RS20135 at 4044.022 kb on + strand at 4044.176 kb on + strand at 4044.269 kb on + strand at 4044.277 kb on - strand at 4044.417 kb on + strand at 4044.601 kb on + strand, within ECOLIN_RS20140 at 4044.602 kb on - strand, within ECOLIN_RS20140 at 4044.602 kb on - strand, within ECOLIN_RS20140 at 4044.602 kb on - strand, within ECOLIN_RS20140 at 4044.684 kb on + strand, within ECOLIN_RS20140 at 4044.684 kb on + strand, within ECOLIN_RS20140 at 4044.685 kb on - strand, within ECOLIN_RS20140 at 4044.685 kb on - strand, within ECOLIN_RS20140 at 4044.685 kb on - strand, within ECOLIN_RS20140 at 4044.767 kb on + strand, within ECOLIN_RS20140 at 4044.890 kb on + strand, within ECOLIN_RS20140 at 4044.890 kb on + strand, within ECOLIN_RS20140 at 4044.891 kb on - strand, within ECOLIN_RS20140
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 4,042,426 + ECOLIN_RS20130 0.46 +0.6 4,042,426 + ECOLIN_RS20130 0.46 +0.7 4,042,936 + ECOLIN_RS20130 0.77 +0.3 4,042,937 - ECOLIN_RS20130 0.77 +0.1 4,043,100 + ECOLIN_RS20130 0.87 +0.2 4,043,170 + -0.2 4,043,171 - -0.4 4,043,171 - +0.2 4,043,317 + -0.1 4,043,318 - -0.4 4,043,382 - -0.2 4,043,385 + -0.6 4,043,472 - ECOLIN_RS20135 0.17 +0.4 4,043,495 + ECOLIN_RS20135 0.21 -0.3 4,043,496 - ECOLIN_RS20135 0.21 -0.2 4,043,524 - ECOLIN_RS20135 0.26 +0.0 4,043,564 + ECOLIN_RS20135 0.32 -0.5 4,043,565 - ECOLIN_RS20135 0.32 +0.1 4,043,628 - ECOLIN_RS20135 0.43 -0.0 4,043,628 - ECOLIN_RS20135 0.43 +0.8 4,043,628 - ECOLIN_RS20135 0.43 -0.4 4,043,628 - ECOLIN_RS20135 0.43 +1.7 4,043,628 - ECOLIN_RS20135 0.43 -0.1 4,043,688 - ECOLIN_RS20135 0.53 +0.0 4,043,697 - ECOLIN_RS20135 0.54 +0.2 4,043,697 - ECOLIN_RS20135 0.54 -0.1 4,043,735 + ECOLIN_RS20135 0.61 +0.2 4,043,903 + ECOLIN_RS20135 0.88 +2.6 4,044,022 + +0.1 4,044,176 + +0.5 4,044,269 + +0.5 4,044,277 - +0.4 4,044,417 + +0.4 4,044,601 + ECOLIN_RS20140 0.12 -0.1 4,044,602 - ECOLIN_RS20140 0.12 -0.2 4,044,602 - ECOLIN_RS20140 0.12 +0.3 4,044,602 - ECOLIN_RS20140 0.12 -0.1 4,044,684 + ECOLIN_RS20140 0.21 -0.3 4,044,684 + ECOLIN_RS20140 0.21 +0.8 4,044,685 - ECOLIN_RS20140 0.21 +0.5 4,044,685 - ECOLIN_RS20140 0.21 -0.0 4,044,685 - ECOLIN_RS20140 0.21 -3.6 4,044,767 + ECOLIN_RS20140 0.31 -0.1 4,044,890 + ECOLIN_RS20140 0.44 +0.3 4,044,890 + ECOLIN_RS20140 0.44 +0.0 4,044,891 - ECOLIN_RS20140 0.44 +0.1
Or see this region's nucleotide sequence